PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G2057
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 296aa    MW: 32194.2 Da    PI: 8.891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G2057genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018195217123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs+   L  H+r+H
  Gh_D01G2057 195 HECSICGAEFSSGQALGGHMRRH 217
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.02E-6127150No hitNo description
PfamPF139127.1E-10127152IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767128155IPR007087Zinc finger, C2H2
SMARTSM003550.45128150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
SuperFamilySSF576677.02E-6190217No hitNo description
PfamPF139127.6E-13194218IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743195217IPR007087Zinc finger, C2H2
SMARTSM003550.01195217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGLLQSQPNL TPFLPFSDSH IKNILQIIKG KRTKRPRAPP SSPPLTSVVA STTTTTTSSG  60
GGGGAVGVSP TITSSFDLAE SSTEEEEREQ DMANCLLLLS QGQTRKVKPP SPPPSEPYTA  120
AAAETDVHQC KTCNRCFPSF QALGGHRASH KKFKVVNDQD INNNRNKEDH RHYDQFNEKA  180
TTLSLHITSK KSRVHECSIC GAEFSSGQAL GGHMRRHRTL TNAPTMTTPA TATTTLDTVV  240
RTSEQRKKPR TVLQLDLNLP APEDDLHKEP NNKVLSLASE GKLLGFSASS LVDCHY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165670.0JX616567.1 Gossypium hirsutum clone NBRI_GE61324 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468255.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P5RTB50.0A0A2P5RTB5_GOSBA; Uncharacterized protein
STRINGGorai.002G245800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2427934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.19e-36C2H2 family protein