PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G2041
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 438aa    MW: 50041.6 Da    PI: 6.1029
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G2041genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.25.1e-2491198186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                  +Wt+++v++Li a+ +++++  +++                     +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++e+ +k+ ++e++
  Gh_D01G2041  91 KWTDNMVRLLIMAVYYIGDDQASSEggnnndpsgkkkggggsggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNEILGKGtACEVV 188
                  7**************9888887766667888999999999****************************************************55**** PP

     trihelix  77 stcpyfdqle 86 
                  ++ +++++++
  Gh_D01G2041 189 ENQRLLESMD 198
                  ******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-2289223No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLGLEMPLHP QPQQQPQNPQ SVQNPHSLHH QQQHPQVVAY AHHETQHVKQ GYHPFGSKPK  60
QISTISDEDE PGFTLDDGGS KRKASPWQRM KWTDNMVRLL IMAVYYIGDD QASSEGGNNN  120
DPSGKKKGGG GSGGLLQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK RYKRVNEILG  180
KGTACEVVEN QRLLESMDLS PKMKDEVKKL LNSKHLFFRE MCAYHNSCGH VTQEVANETP  240
PQMQQRCLHS SDNAQIGGNP VGGSTETLKL EESDDEDDDD DDDDESDGDD DDDDKETMDG  300
HDEDQNVENS SRKRPRKGGV SPSMQQLSNE VTKVIQDGSK NSWEKKHWLK MKLMQLEEQE  360
VSYQCEAFEL EKQRLKWVKF SGKKEREMEK SKLENQRKRL ENERMVLIVR QQELKLVDMS  420
DVRQHASNKR GDLSSFTS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6230810.0JX623081.1 Gossypium hirsutum clone NBRI_GE70112 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687481.10.0PREDICTED: kinesin-related protein 4-like isoform X1
RefseqXP_016687482.10.0PREDICTED: ATP-dependent RNA helicase dbp4-like isoform X2
TrEMBLA0A1U8JAX70.0A0A1U8JAX7_GOSHI; ATP-dependent RNA helicase dbp4-like isoform X2
TrEMBLA0A1U8JB000.0A0A1U8JB00_GOSHI; kinesin-related protein 4-like isoform X1
STRINGGorai.002G243900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-103sequence-specific DNA binding transcription factors