PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1913
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 361aa    MW: 39964.8 Da    PI: 6.6112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1913genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08203250455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Gh_D01G1913 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250
                  8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-15197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-8197254No hitNo description
PROSITE profilePS5088814.519199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14199267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-6203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESNAGTTET RSNVTVPDGG EVAAFESLQF TDEIHRLISA PGTDNASSFT ALLELPATQV  60
VELLHSPESV KLIVASAPNV EDFKGSFHFP SNTGLIQKDA RFSVFSGEGN NKNEKSNSPE  120
MTSKNSSANL EKAVKSEPAE TVSSLPLVSD PTMENRNIKR KDREKKVKGS TKKSKTATNE  180
RLEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD  240
EIINHVQSLQ RQVEFLSMRL ATVNPRIDFN LDSLFTPESG STMDGGNFPS LVTPLIWPDV  300
QVNGYRKQFQ HQWHFDTLKQ PIWGREEVCN NYVTLENSLL SCDSSANSAA TLHANQLKME  360
L
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468024.10.0PREDICTED: transcription factor bHLH48-like isoform X1
SwissprotQ3EAI14e-94BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A0D2QHH60.0A0A0D2QHH6_GOSRA; Uncharacterized protein
STRINGGorai.002G229100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-105bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]