PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1910

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 346aa MW: 37896.2 Da PI: 9.0044

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1910	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.3e-13	274	319	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq Gh_D01G1910 274 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 319 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-16	271	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-12	272	321	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.2E-15	273	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-10	274	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDSSTHQSYQ NQNNQSNSGL LRFRSAPSSL LATVDCGVNK GGFESRFINS SSGGDNETED 60 KSGSVAAVNY ANSAPTYSGL PPQYPRQSSA MDNSYELLGL NHHSQGKPVT SSLMRQSSSP 120 PGLFTNLSVQ NGFSGMKGLG NYCGVNGTSG ELSPSSNRLK NQISFSSRQP SSLGILSQIS 180 EIENENLGAN SFDGGKPEYQ CGSWNESAQL TEKHKLFTNN QNGDIGSGVH VLPRHLSLPK 240 TSNEMAVMEK YLQFQDSVPC KIRAKRGCAT HPRSIAERVR RTRISERMRK LQELVPNMDK 300 QTNTADMLDL AVEYIKDLQK QFKTLSDNRA NCKCLNTQKT VPNQIL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDSSTHQSYQ NQNNQSNSGL LRFRSAPSSL LATVDCGVNK GGFESRFINS SSGGDNETED  60
KSGSVAAVNY ANSAPTYSGL PPQYPRQSSA MDNSYELLGL NHHSQGKPVT SSLMRQSSSP  120
PGLFTNLSVQ NGFSGMKGLG NYCGVNGTSG ELSPSSNRLK NQISFSSRQP SSLGILSQIS  180
EIENENLGAN SFDGGKPEYQ CGSWNESAQL TEKHKLFTNN QNGDIGSGVH VLPRHLSLPK  240
TSNEMAVMEK YLQFQDSVPC KIRAKRGCAT HPRSIAERVR RTRISERMRK LQELVPNMDK  300
QTNTADMLDL AVEYIKDLQK QFKTLSDNRA NCKCLNTQKT VPNQIL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468022.1	0.0	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	1e-101	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2P5RXW1	0.0	A0A2P5RXW1_GOSBA; Uncharacterized protein
STRING	Gorai.002G228900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-101	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]