PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1844
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 292aa    MW: 33264.4 Da    PI: 8.8766
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1844genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.2e-09159209251
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH.HHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv.WFqNr 51 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV v +F+N 
  Gh_D01G1844 159 RKKLRLSKEQSAFLEENFKEHNNLNPKQKLALAKQLNLRPRQVEVgFFKNT 209
                  788899**************************************9677776 PP
2HD-ZIP_I/II90.52e-29159256191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvav.WFqnr.......RARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+v +F+n          Rtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  Gh_D01G1844 159 RKKLRLSKEQSAFLEENFKEHNNLNPKQKLALAKQLNLRPRQVEVgFFKNTdfkqkwyENRTKLKQTEVDCEYLKRCCETLTEENRRLHKEVQELR-A 255
                  69*******************************************5567742222233479**********************************9.5 PP

  HD-ZIP_I/II  91 l 91 
                  l
  Gh_D01G1844 256 L 256
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.6E-526119IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.7E-11143208IPR009057Homeodomain-like
SuperFamilySSF466891.97E-9150206IPR009057Homeodomain-like
PROSITE profilePS500719.75155205IPR001356Homeobox domain
SMARTSM003893.7E-4157220IPR001356Homeobox domain
PfamPF000463.4E-7159209IPR001356Homeobox domain
CDDcd000865.51E-8159215No hitNo description
PfamPF021839.1E-12223257IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.3E-26223266IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MELGLSLDGS SKPFSFLEKT PKLSSNDHLG FCLGLGRSQE KRDSLEAERR GNGGDLKRVS  60
SDPHLQLHIR LPWLFDNLHE TGLSKGRGRG LDVNRLPLVA LAGEATVAHS SPNSAVSSFQ  120
MDFWFRNRNS RGKRDLDAET ERGSSRASDD DEDDNGSSRK KLRLSKEQSA FLEENFKEHN  180
NLNPKQKLAL AKQLNLRPRQ VEVGFFKNTD FKQKWYENRT KLKQTEVDCE YLKRCCETLT  240
EENRRLHKEV QELRALKTCQ PFYMQLPATT LTMCPSCERV TTTSATDTKI GI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163SRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725843.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466652e-89HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U8MJR40.0A0A1U8MJR4_GOSHI; homeobox-leucine zipper protein HAT14-like
STRINGGorai.002G223900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-78homeobox from Arabidopsis thaliana