PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1714
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 479aa    MW: 53436.3 Da    PI: 6.6498
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1714genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.2e-30242301159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ +d +v+++tYeg+Hnh+
  Gh_D01G1714 242 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLDDMSVLITTYEGTHNHP 301
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-32227303IPR003657WRKY domain
SuperFamilySSF1182901.44E-27235303IPR003657WRKY domain
PROSITE profilePS5081129.333237303IPR003657WRKY domain
SMARTSM007744.3E-37242302IPR003657WRKY domain
PfamPF031062.8E-27243301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MGRSEEKEME IDLSLTLDTK QEHMEAVKDQ TKMQRDDNQH KAVDLQDKED QQTSMAATGE  60
VEVEDSAPLQ GHSKAEELSM LQMEMNRMKE ENQVLRKEVE RTLQDYNHLQ MKFAVIQQNN  120
PNKEPRIFLS LNGNESSSQE QQANQRNLNT VNHRKHGSPL LHENDDEEKN ELGLSLRLET  180
SSTQRGIGEE EHKKESQGAP NVESVQNKLH QSQPSAITSH AVSTPNRKPR VSVRARCQTA  240
TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQV QRCLDDMSVL ITTYEGTHNH  300
PVPVGATAMA SIASSASPSF VLLDSSSSLS NGIPNNHHIN SLPTNLSDPS KGILHNLTNN  360
HHFNHQMLPT VPSAHQQVFP WMPSRLNQNN GREWKSSEDE DKSLLAENVK AIATDPNFRV  420
AVAAAITSLT NKEAQTNHHH PIPMGSSLVG RESESGSSSA NNWVLESLLE TSKPIHHSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21230305276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5887141e-149JX588714.1 Gossypium hirsutum clone NBRI_GE23219 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707183.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F01e-78WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A1U8L1D70.0A0A1U8L1D7_GOSHI; probable WRKY transcription factor 9
STRINGGorai.002G207600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-67WRKY DNA-binding protein 9