PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1705

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 932aa MW: 103031 Da PI: 5.7642

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1705	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.3e-28	612	662	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ Gh_D01G1705 612 EKTISLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 662 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.143	601	682	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-24	614	662	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-24	828	920	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.5E-23	832	915	No hit	No description
SMART	SM00666	3.1E-26	834	917	IPR000270	PB1 domain
PROSITE profile	PS51745	25.974	834	917	IPR000270	PB1 domain
CDD	cd06407	4.47E-44	835	916	No hit	No description
Pfam	PF00564	1.2E-16	835	916	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MEGDGAVPSD FSPNSTFVDA AMDLDLMDEL LFEGCWLETN DDFNFMQPAP STSNDLNQSI 60 TVPSNANLHQ MHQGETERSV SPPCDGSAVG NASSLLQPGT FIVQGTELGS RWWIGPSAES 120 GSSLSVKERL MQAIGYLKES TKDRDLLIQI WVPVNREGKH VLTTEGQPYS LNTNCKSLEI 180 FRDVSKSYNF PAEEDTKESV GLPGRVFLEK LPEWTPDVRF FRSEEYPRIS FAEKYNVRGS 240 LALPVFERAN GTCLGVVEIV TTIQKSNYHP ELEHVCKALE AVDLRSSPNF TPPNVEACNE 300 LYQAALPEIA EVLRSVCKTY KLPLALTWAP CLNQGKSGCR HSYENFYHCV STVDTACFVA 360 DEEFSEFLEA CSEHHMFRGQ GVVGRAFTTN KQCFATDITV FSKTNYPLSH HARMFGLRGA 420 VAIPLQSIFT GLVEFVLELF LPKDCHDSEA QKQMLNSLSG FMQQACQSLH VVVDKMLEEE 480 VILPVKEVVV ASDRRSDKEE TQFMVSSAKE NSPEESSWIA HMMEAQQKGK GVSVSWEYQK 540 EEPKEEFNVT THWEDNQLEL HDKEVLSDFQ QLHQNDESKA SVEGGGGDSS SSGGRGVLPS 600 KRAGEKRRTK MEKTISLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRHHG ITRWPSRKIK 660 KVGHSLRKLQ LVIDSVQGAE GAIQIGSFYS SFPELSSPNL SGNDRSSSLK ISGHSKPSEP 720 QLENCMFSQG AAAPKSPSSS CSQSSGSSTC CSIGVKQHST SISALCSADG LMVEDPGGAL 780 KRARSDAELH SLKQEEPKLL ARSQSHKTLG ELPPLETQLP LPKTGGQNLR TGGAFRVKAT 840 FGEVKIRFSL QPSWGFRDVQ QEIAKRFNIE DVSRMCLKYL DDDNEWVLLT CDADLEECRD 900 IYKSSQSHTI KISLHQASHP NLGSSFGSSA PL

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MEGDGAVPSD FSPNSTFVDA AMDLDLMDEL LFEGCWLETN DDFNFMQPAP STSNDLNQSI  60
TVPSNANLHQ MHQGETERSV SPPCDGSAVG NASSLLQPGT FIVQGTELGS RWWIGPSAES  120
GSSLSVKERL MQAIGYLKES TKDRDLLIQI WVPVNREGKH VLTTEGQPYS LNTNCKSLEI  180
FRDVSKSYNF PAEEDTKESV GLPGRVFLEK LPEWTPDVRF FRSEEYPRIS FAEKYNVRGS  240
LALPVFERAN GTCLGVVEIV TTIQKSNYHP ELEHVCKALE AVDLRSSPNF TPPNVEACNE  300
LYQAALPEIA EVLRSVCKTY KLPLALTWAP CLNQGKSGCR HSYENFYHCV STVDTACFVA  360
DEEFSEFLEA CSEHHMFRGQ GVVGRAFTTN KQCFATDITV FSKTNYPLSH HARMFGLRGA  420
VAIPLQSIFT GLVEFVLELF LPKDCHDSEA QKQMLNSLSG FMQQACQSLH VVVDKMLEEE  480
VILPVKEVVV ASDRRSDKEE TQFMVSSAKE NSPEESSWIA HMMEAQQKGK GVSVSWEYQK  540
EEPKEEFNVT THWEDNQLEL HDKEVLSDFQ QLHQNDESKA SVEGGGGDSS SSGGRGVLPS  600
KRAGEKRRTK MEKTISLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRHHG ITRWPSRKIK  660
KVGHSLRKLQ LVIDSVQGAE GAIQIGSFYS SFPELSSPNL SGNDRSSSLK ISGHSKPSEP  720
QLENCMFSQG AAAPKSPSSS CSQSSGSSTC CSIGVKQHST SISALCSADG LMVEDPGGAL  780
KRARSDAELH SLKQEEPKLL ARSQSHKTLG ELPPLETQLP LPKTGGQNLR TGGAFRVKAT  840
FGEVKIRFSL QPSWGFRDVQ QEIAKRFNIE DVSRMCLKYL DDDNEWVLLT CDADLEECRD  900
IYKSSQSHTI KISLHQASHP NLGSSFGSSA PL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3331	0.0	boll\| ovule\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016707435.1	0.0	PREDICTED: protein NLP2-like isoform X1
Refseq	XP_016707436.1	0.0	PREDICTED: protein NLP2-like isoform X1
Refseq	XP_016707437.1	0.0	PREDICTED: protein NLP2-like isoform X1
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A1U8KYF4	0.0	A0A1U8KYF4_GOSHI; protein NLP2-like isoform X1
STRING	Gorai.002G206700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein