PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G1579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 368aa MW: 42346 Da PI: 6.8438 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.1 | 6.3e-25 | 55 | 136 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +r+em+ r++++k++k+lWe++s+ mr++gf rsp++C++kw+nl k++kk k+ +++ s+s+ ++ y++++e Gh_D01G1579 55 WVQDETRSLIGFRKEMDGRFNTSKSNKHLWEKISAMMRKKGFDRSPTMCTDKWRNLLKEFKKAKHPDRG--SGSV-KMCYYKEIE 136 *****************************************************************9998..5666.566999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-4 | 45 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.072 | 47 | 111 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0013 | 51 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 7.96E-28 | 55 | 118 | No hit | No description |
Pfam | PF13837 | 1.9E-19 | 55 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MARDMIIEVT TNGGFPDHLH HYHPHSLQQQ QQMILGESSG DDPEVKAPKK RAEIWVQDET 60 RSLIGFRKEM DGRFNTSKSN KHLWEKISAM MRKKGFDRSP TMCTDKWRNL LKEFKKAKHP 120 DRGSGSVKMC YYKEIEEILR ERTKKSYKSP TSPPKLDSFM HFSDKGLCFE DTSITFGPLE 180 GMLLLLLPSG RPALNIEQGL DYDGHPLAIT TASGVPPWNW RETPGNGGDC LPYGGRVITV 240 KYGDYTQRIG IDGTTEAIRE AIKSAFRLRT KRAFWLEDED HIIRSLDREM PLGNYKLHLD 300 EGLAVKVCLY DESDHIPVHT EEKIFYTEDD YREYLVLRGY AGLREIDGYR NIDSMDDLQT 360 NTIYRGVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 1e-45 | 49 | 134 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016707230.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like isoform X2 | ||||
Swissprot | Q9FX53 | 1e-176 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A1U8KXS8 | 0.0 | A0A1U8KXS8_GOSHI; trihelix transcription factor GT-1-like isoform X2 | ||||
STRING | Gorai.002G190600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-164 | Trihelix family protein |
Publications ? help Back to Top | |||
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