PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1535

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 216aa MW: 23985.1 Da PI: 6.5932

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1535	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	223.4	6.3e-69	6	168	2	168
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesasts 95 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas +lla+ h de + + ee + ++ ++s ++s Gh_D01G1535 6 HLFDLPEQICYVQCGFCTTILLVSVPRSSLSMVVTVRCGHCTSLLSVNMMKASfvplHLLASFAHDDEPKEGAVSEEVGGHR---------KTSDRRS 94 7899*******************************************999855555555555533322222333332222.........2222222 PP YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 s ++ s+n +e++ rv p v++PPekrqr+Psaynrfikeei+r+k++nP+i h+eafs+aaknWahfP+ih Gh_D01G1535 95 PSLMSSSDNGEEDIVRVNPtVNKPPEKRQRAPSAYNRFIKEEIRRLKTQNPNIPHKEAFSTAAKNWAHFPPIHK 168 22223378999999999888***************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.8E-64	11	168	IPR006780	YABBY protein
SuperFamily	SSF47095	7.2E-9	114	165	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-6	116	168	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSTLNHLFDL PEQICYVQCG FCTTILLVSV PRSSLSMVVT VRCGHCTSLL SVNMMKASFV 60 PLHLLASFAH DDEPKEGAVS EEVGGHRKTS DRRSPSLMSS SDNGEEDIVR VNPTVNKPPE 120 KRQRAPSAYN RFIKEEIRRL KTQNPNIPHK EAFSTAAKNW AHFPPIHKHN KGEGESCEQD 180 EGEASWNVEA TEVGFKIICP FLGDAVGNEV FTASLY

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583559	2e-43	JX583559.1 Gossypium hirsutum clone NBRI_GE16632 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467406.1	1e-141	PREDICTED: axial regulator YABBY 4 isoform X1
Swissprot	Q9LDT3	7e-75	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2P5SFK3	1e-140	A0A2P5SFK3_GOSBA; Uncharacterized protein
STRING	EOY00530	1e-111	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8044	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-72	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]