PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1363
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 742aa    MW: 81863.3 Da    PI: 5.539
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1363genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07141163427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C ff++ G C  GdrC F Hgp
  Gh_D01G1363 141 VPCIFFLK-GLCIKGDRCAFLHGP 163
                  69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033867IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183966IPR000571Zinc finger, CCCH-type
PfamPF156636.6E-123993No hitNo description
PROSITE profilePS5010310.5126995IPR000571Zinc finger, CCCH-type
SMARTSM003560.0527194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418137164IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5137163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5138162IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4142163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MVAATPQQQQ QQQKQAAVAT TTVTVAGATK PSAEEEALKR NTDCVYFLAS PLTCKKGSEC  60
EYRHSEYARV NPRDCYYWLN GNCLNPKCGF RHPPLDGLLG TQATIPTGSS KPSSHTAATT  120
APASHMPYNQ GASYSSSKQA VPCIFFLKGL CIKGDRCAFL HGPTTSNKAT QLAATTTASE  180
PHLLKKTFGA VEASQSQKFP PTNVSNTVGL APESKPSAKV KAAFTRSGTG TEKSVPSPVG  240
LDEELPRHKA TKTTSVVNGG SMGHSGWLHQ PHASDEQTFH GLKDTEEFLR ESSPGFDVLV  300
DDELRDSDFY HGEDQYGGTR GHEGRNVNEY DIGRPANFDA MVDVDQEMFH DARGYDSFDN  360
VQGNYDWDQQ RASSERIPLG SSTLERRGYS RVDSPDHVEE SDLRHRLSKR RRVNGLKSVV  420
SHDNAVENYE GERNYRAGSH RDSHRLPPNE RSLGSRLQGR IKLPGRSVNG SDLHSEREIE  480
RGRNWGRHSP GKPQTSSQGR LRDRIKGKVE GDFNNNEGRN FGGPRIRREI TDERNADFAG  540
PKSLAELKVG KNSDNKQHQS LGKRRSVGDH QQIEGDLSFK GPMPLSEILK RKRQSEGATS  600
GDGIASVNKE DVDQKQSKGS LISGSNNKEV SVTVKEANKD EESKVAATDI GITEATHGES  660
SQPLNMSEHE ADADAEDGII GDERIEDHEV EADDQRDGEY YYEQVDEGEY NYEEDENVDP  720
EEEYIEEEDG DDFAKKLGVM FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408412KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.153100.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707373.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A1U8L1Z70.0A0A1U8L1Z7_GOSHI; zinc finger CCCH domain-containing protein 17-like
STRINGGorai.002G167900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215