PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G1219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 321aa MW: 35827.2 Da PI: 7.2492 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.7 | 1.7e-17 | 162 | 216 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Gh_D01G1219 162 RKKLRLSKEQSAFLEESFKEQNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 216 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.5 | 1e-39 | 162 | 249 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr Gh_D01G1219 162 RKKLRLSKEQSAFLEESFKEQNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRSCETLREENKRLQKELQELR 249 69*************************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.2E-9 | 27 | 129 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 8.3E-18 | 143 | 219 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.14E-18 | 155 | 219 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 158 | 218 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 160 | 222 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.8E-15 | 162 | 216 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.16E-15 | 162 | 219 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 193 | 216 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00421 | 211 | 249 | No hit | No description |
Pfam | PF02183 | 1.4E-9 | 218 | 250 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.7E-20 | 218 | 261 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MELALSLGDP SKPFSLLGNT PKLSRSKDLG FCMGLGDGFK SQHKIDAFEA QSKGGDSDEK 60 RVPSDLPLYR HLLPSSQTQL RIPCLTHKYG DGRGLDVNQL PPEAAAEEDD EESEEGAGIS 120 SPNSTVSSFR MDFGIRNGKN KGKRDLEVER VSDDDDENGS TRKKLRLSKE QSAFLEESFK 180 EQNTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRS CETLREENKR 240 LQKELQELRV LKTCQPFYMQ SPATTLTMCP SCERLATKGS AATAATGYPS FFSSANTCDP 300 ETSPSPPGNF FKSLDVTSEK T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 166 | TRKKLRL |
2 | 210 | 218 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590975 | 5e-54 | JX590975.1 Gossypium hirsutum clone NBRI_GE25995 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016706760.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 7e-89 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A1U8KWG4 | 0.0 | A0A1U8KWG4_GOSHI; homeobox-leucine zipper protein HOX11-like | ||||
STRING | Gorai.002G155800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-73 | homeobox from Arabidopsis thaliana |