PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1057
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 254aa    MW: 28374.1 Da    PI: 6.5089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1057genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-134188455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 +h   Er RR+++++ f+ L  llP++      K +K++i+ +Av YIk+Lq
  Gh_D01G1057 41 MHIWTERERRKKMRNMFSSLHALLPQL----PAKADKSTIVDEAVTYIKNLQ 88
                 67778*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-163598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1536103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.0943787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.21E-154092No hitNo description
PfamPF000103.2E-104188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-94593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2600.001175249No hitNo description
CDDcd048730.00169177211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEPETVAVAE VGQKRSRKGG LKQGKANGGG DHGGDQSEHE MHIWTERERR KKMRNMFSSL  60
HALLPQLPAK ADKSTIVDEA VTYIKNLQQT LQTLEKQKLE KLRNSAKVDY DQSSIITSQV  120
QPPESREAFF TDNQGPTNNY PVTIDMSQTF PAQASQACFQ TWFSSNVVIS MCGDDAQINV  180
CSPRKPGTFA TILYILEKHQ LEVVSAHISS DQYRTMYMIH VHAGGASEQF PELLSIEETF  240
KLAAGEMNLC LFSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707140.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A1U8KXH90.0A0A1U8KXH9_GOSHI; transcription factor bHLH95-like
STRINGGorai.002G135000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-41bHLH family protein