PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G1010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 438aa MW: 49926.6 Da PI: 7.4044 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.6 | 2.6e-19 | 73 | 154 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++rl +p kfa+++++k + t+tl+ +sg W+v+l+++ ++ ++ +GWk Fvk++ L ++Df++Fk++g s f v +f Gh_D01G1010 73 DFLQRLEIPEKFAKNIKKK--LPETVTLKGPSGIIWDVRLTVDDD-DTLFFNGGWKTFVKDHSLVANDFLIFKYNGVSHF--DVLMF 154 55689********888755..888****************54443.4599************************998888..66655 PP | |||||||
2 | B3 | 45.4 | 1.5e-14 | 313 | 393 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f +++p +v+++ + +p ++++ k + +++l+ + r+W+ ++ y ++++ l++GW++Fv++n+L+e D++vF+ Gh_D01G1010 313 FMIIMKPTHVGRRFYMAVPTAWVAKYlP-K--DNADVILRM-NKRTWKTRFYYHRSRDCGGLSGGWRNFVNDNNLEEHDVCVFQP 393 677899********************42.3..334676655.78*******8877776678**********************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.44E-23 | 62 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.776 | 63 | 157 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-23 | 65 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.02E-21 | 65 | 155 | No hit | No description |
SMART | SM01019 | 1.5E-16 | 66 | 157 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-16 | 75 | 151 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 309 | 408 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.54E-19 | 313 | 408 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 313 | 411 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-13 | 313 | 394 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-12 | 313 | 406 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.83E-19 | 313 | 402 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MGLWITATTA EQGSQRTVSV TRKIESFSSP YSTKCTISSQ QMEDTCKDCR DWEEEIFWTH 60 FQSVHFTQFL HGDFLQRLEI PEKFAKNIKK KLPETVTLKG PSGIIWDVRL TVDDDDTLFF 120 NGGWKTFVKD HSLVANDFLI FKYNGVSHFD VLMFDGKSLC EKASSYFVRK CMHTESDATH 180 QTKRKVNENS DEILHNSSQC GLESGPEKST NNDMDARPSR KPIKSAASKK KIRNLDNGTQ 240 SIHAKQSLVG KELPTFPGEV KVERLETEYE HTTMDGDSDV FGLWHTTGKR FVTQFEKTNV 300 ILKAQEALTN EGFMIIMKPT HVGRRFYMAV PTAWVAKYLP KDNADVILRM NKRTWKTRFY 360 YHRSRDCGGL SGGWRNFVND NNLEEHDVCV FQPANIGSKP MILDVNIFHV LQKAVPLSQA 420 DPLPSSPELI ASTPDMDS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11303 | 0.0 | boll| ovule |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016708130.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like | ||||
Refseq | XP_016708132.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A1U8L0I7 | 0.0 | A0A1U8L0I7_GOSHI; B3 domain-containing protein REM16-like | ||||
STRING | Gorai.002G130300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-76 | B3 family protein |