PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 73aa MW: 8734.33 Da PI: 10.3238 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.1 | 1.7e-09 | 25 | 66 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P + +k +Ka +L + ++Y++sLq Gh_D01G0879 25 KVRREKISERMKYLQDLVPGC----NKITDKAGMLNEIINYVQSLQ 66 78*******************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00025 | 1.8E-5 | 2 | 26 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
PROSITE profile | PS50888 | 13.186 | 15 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-14 | 16 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-14 | 16 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-5 | 21 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.33E-7 | 24 | 70 | No hit | No description |
Pfam | PF00010 | 5.1E-7 | 25 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005525 | Molecular Function | GTP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MIKFKAFDLG CHQIARRVWK DYYAKVRREK ISERMKYLQD LVPGCNKITD KAGMLNEIIN 60 YVQSLQRQVE VKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11680 | 5e-70 | boll |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109875593 | 5e-70 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and stems. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243146 | 5e-60 | AC243146.1 Gossypium hirsutum clone MX073K14-jni, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491366.1 | 2e-48 | PREDICTED: GTP-binding protein SAR1-like isoform X2 | ||||
Refseq | XP_012491372.1 | 2e-48 | PREDICTED: GTP-binding protein SAR1-like isoform X2 | ||||
Refseq | XP_012491379.1 | 2e-48 | PREDICTED: GTP-binding protein SAR1-like isoform X2 | ||||
Swissprot | Q8GY61 | 1e-22 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A0D2Q138 | 5e-47 | A0A0D2Q138_GOSRA; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2P5S388 | 6e-47 | A0A2P5S388_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G193500.1 | 9e-48 | (Gossypium raimondii) | ||||
STRING | Gorai.001G223600.1 | 1e-47 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16325 | 3 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 6e-25 | cryptochrome-interacting basic-helix-loop-helix 1 |