PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0872

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 906aa MW: 100830 Da PI: 6.9632

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0872	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.8	1.2e-29	587	638	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GIkRWP+Rkik++ Gh_D01G0872 587 AEKTITLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKV 638 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.905	577	658	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-26	590	638	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.57E-23	809	896	No hit	No description
SMART	SM00666	2.7E-27	810	893	IPR000270	PB1 domain
PROSITE profile	PS51745	26.338	810	893	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.0E-22	811	890	No hit	No description
Pfam	PF00564	4.6E-19	812	892	IPR000270	PB1 domain
CDD	cd06407	6.68E-40	812	891	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence Send to blast
MDFDYMDELL LDGCWLETTQ GSDFLNPTLP FSNNFFDPAF TWPTSESNAG DLGGGLSHQG 60 ENQRSLLSGN SHWNEAQGES LVSPHFSQSH SLDSDCVTDG SEPNRRWWIG PRVNSGPATS 120 VMQRLIQALG YIKAFGKEKD VLVQLWLPVN RGGRRFLTTS EQPFSLDPNS QKLASYRNIS 180 VKYDFPAEED SKDIAGLPGR VFLSKVPEWT PDVRFFKRDE YPRVGHAQEH DVRGTFALPV 240 FEQGSGTCLG VIEVVMTTEK IKIQPELESV CKALEAVNLR SSITSRTQNI KAYSNCYQAA 300 LPEIKELLRC ACETHRLPLA QAWVPCIQQG KEGCRHSSEN YVHCVSTVDD ACCIADPSIQ 360 GFHEACSEHH LLKGQGVIGR AFMTNQPCFS TDITSFKKTE YPLAHHAMMF NLHAAVALRF 420 RSIHTGKADF VLEFFLPAHC RDPEGQRKML NSLSIIIQQV CCSLRVVTDK ELVEETDLAV 480 SEVVAPSDGL PIREESSKRQ CTNHHSKKLS GESSSCLTKV QKSSNTALVL EKEKPRPMLD 540 EKLPEVEQHQ QHISLQESVE CGDSTFNEIS FSSVTMGKTS EKRRSKAEKT ITLQVLRQYF 600 AGSLKDAAKS LGVCPTTLKR ICRQHGIKRW PSRKIKKVGH SLQKLQHVID SVQGASGAFH 660 ISNFYANFPE LASPKLLGNS ALSTSPLNDK PKQINIQPEG GDFLSQAALS NSPSSSCSQS 720 SSSSHSCSSG THRPSNFNMS GKEDHIIGDN SGDGELKRVK SDVELHASSQ EGPKLFPRSQ 780 SLRSLKEQLI CDNLQPISKN TSPIAHDLEA QRVKVTYGDE KIRLRMQSKW RFKDLLHEIA 840 RRFNIDDISR FDLKYLDDDS EWVLLTCDAD MVECIDVCGS SQGNTIKLSL RVSHHHLDQF 900 SGSTGS

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence Send to blast

MDFDYMDELL LDGCWLETTQ GSDFLNPTLP FSNNFFDPAF TWPTSESNAG DLGGGLSHQG  60
ENQRSLLSGN SHWNEAQGES LVSPHFSQSH SLDSDCVTDG SEPNRRWWIG PRVNSGPATS  120
VMQRLIQALG YIKAFGKEKD VLVQLWLPVN RGGRRFLTTS EQPFSLDPNS QKLASYRNIS  180
VKYDFPAEED SKDIAGLPGR VFLSKVPEWT PDVRFFKRDE YPRVGHAQEH DVRGTFALPV  240
FEQGSGTCLG VIEVVMTTEK IKIQPELESV CKALEAVNLR SSITSRTQNI KAYSNCYQAA  300
LPEIKELLRC ACETHRLPLA QAWVPCIQQG KEGCRHSSEN YVHCVSTVDD ACCIADPSIQ  360
GFHEACSEHH LLKGQGVIGR AFMTNQPCFS TDITSFKKTE YPLAHHAMMF NLHAAVALRF  420
RSIHTGKADF VLEFFLPAHC RDPEGQRKML NSLSIIIQQV CCSLRVVTDK ELVEETDLAV  480
SEVVAPSDGL PIREESSKRQ CTNHHSKKLS GESSSCLTKV QKSSNTALVL EKEKPRPMLD  540
EKLPEVEQHQ QHISLQESVE CGDSTFNEIS FSSVTMGKTS EKRRSKAEKT ITLQVLRQYF  600
AGSLKDAAKS LGVCPTTLKR ICRQHGIKRW PSRKIKKVGH SLQKLQHVID SVQGASGAFH  660
ISNFYANFPE LASPKLLGNS ALSTSPLNDK PKQINIQPEG GDFLSQAALS NSPSSSCSQS  720
SSSSHSCSSG THRPSNFNMS GKEDHIIGDN SGDGELKRVK SDVELHASSQ EGPKLFPRSQ  780
SLRSLKEQLI CDNLQPISKN TSPIAHDLEA QRVKVTYGDE KIRLRMQSKW RFKDLLHEIA  840
RRFNIDDISR FDLKYLDDDS EWVLLTCDAD MVECIDVCGS SQGNTIKLSL RVSHHHLDQF  900
SGSTGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016708145.1	0.0	PREDICTED: protein NLP4-like
Refseq	XP_016708146.1	0.0	PREDICTED: protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A1U8L0C6	0.0	A0A1U8L0C6_GOSHI; protein NLP4-like
STRING	Gorai.002G115800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein