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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D01G0798 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | bHLH | ||||||||
| Protein Properties | Length: 260aa MW: 29397.8 Da PI: 4.916 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 29.9 | 9.8e-10 | 143 | 186 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++ r RR++i ++ +eL +l+P K++ ae+L+ A +YIk+Lq
Gh_D01G0798 143 IAARERRRKITKKTQELGKLVPGG-----SKMNTAEMLQSAFKYIKYLQ 186
56799*****************95.....5******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 2.29E-10 | 134 | 189 | No hit | No description |
| SuperFamily | SSF47459 | 2.22E-12 | 135 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 12.779 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.3E-11 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 142 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.1E-7 | 144 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 260 aa Download sequence Send to blast |
MVLSSYFDCQ TDVPMYEIKT VEAESETQLA APDGLECYWN AFELPYTFPA SYLDPQNYTS 60 LLPLYSIPPE VIPYETLSSY PCPKRHKLIE DHYCSDLMPG VFDGVAVSPC PLLEDHQINL 120 EGMKTVGNCN KISEEKCVSV QSIAARERRR KITKKTQELG KLVPGGSKMN TAEMLQSAFK 180 YIKYLQAQVG TLQVMDSFPE NEKRSWDGKM EMVTSPKVQE KLYMEDKCLV AKDAVLSLTT 240 LFKPPLSHEL TRLLSLPSND |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012462937.1 | 0.0 | PREDICTED: transcription factor bHLH53-like | ||||
| TrEMBL | A0A2P5S3Y0 | 0.0 | A0A2P5S3Y0_GOSBA; Uncharacterized protein | ||||
| STRING | Gorai.002G107000.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM16954 | 4 | 9 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G34820.1 | 4e-24 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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