PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0792 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 39996.5 Da PI: 5.223 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl Gh_D01G0792 16 RGPWSPQEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 3e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Gh_D01G0792 69 RGNFSKEEEETIIRLHETLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.346 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-29 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.06E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.697 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-27 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.47E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MGKGRAPCCD KDKVKRGPWS PQEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFSKEEEETI IRLHETLGNK WSKIASHLPG RTDNEIKNVW NTHLKKRLAP 120 KNGKIPQNDE SKETCMVSSS CSSITFVSSP CGKRNLEVEL EQQWHEGSPS KKPREGFPVS 180 DKAEDYKTEV PSHNSGPFEE PKEFPSSSIS SSNSNITNSS QVNVPNPENH GDSLLNFIGV 240 CDWKNNTSEE VNKPEILNTA FDIPLESDSD FWNMLDSLGS FQPDEIQSNE VEGNQSPDFG 300 EEYSKENENN KWLQYLEIEL GLEVTKNENH NNLSNTAAEP LVPEMYDMLL KP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459139 | 2e-53 | AJ459139.1 Gossypium hirsutum partial myb113 gene, clone pGhMYB113. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016706798.1 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
TrEMBL | A0A1U8L0C2 | 0.0 | A0A1U8L0C2_GOSHI; protein ODORANT1-like | ||||
STRING | Gorai.002G106300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56160.1 | 4e-77 | myb domain protein 72 |