PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 525aa MW: 57601.8 Da PI: 6.924 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.5e-30 | 283 | 341 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Gh_D01G0657 283 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILVTTYEGNHNHP 341 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-33 | 267 | 343 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-28 | 275 | 343 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.861 | 277 | 343 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 282 | 342 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 284 | 341 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MDPVDHHIVS LVQSSDGIKR VVNEMDFFAD DRSSKQHDKA DDDVHHHHHV KTESEHHGAD 60 QDDDVNTGLN LLTTNTASEK SSVAGDGITS SQNLKEKQRV NQLADVRAEL DRINAENQRL 120 KLTLNQVNSN YYALQMHLVS LTQRHRNRIA ESSEANTQMN RPIEEKTHGE GMAARQFMDL 180 VQTETKAEND ELSESSSEDR CQELSGSPGN TIVESMERRQ KNNTSRNQRE DTPEGLPHPA 240 GWLSNKGPKF NTSKDNEQAQ QTMAMIRKAR VSVRARSEAS MISDGCQWRK YGQKMAKGNP 300 CPRAYYRCTM ATGCPVRKQV QRCAEDRTIL VTTYEGNHNH PLPPAAMAMA STTSAAASTL 360 LSGSMPSADH GIMNSNIVPK GMLPGSPNLI TLSASAPFPT VTLDLTHPPN QRPLHQLHPL 420 SPNWPHNISS LPAHLLGHPI YNQSKLLGTY LSSQGNNELP VHLSQNQMQG HPMVDTAATA 480 AAITADPNFT AALVAAITSI IGNSHRDNSG NNNSTTSRNT GDNNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 269 | 345 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669824 | 0.0 | KF669824.1 Gossypium hirsutum WRKY transcription factor 16 (WRKY16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012460962.1 | 0.0 | PREDICTED: WRKY transcription factor 6-like | ||||
Swissprot | Q9C519 | 1e-117 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1U8L023 | 0.0 | A0A1U8L023_GOSHI; WRKY transcription factor 6-like | ||||
STRING | Gorai.002G091300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19246 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 7e-86 | WRKY family protein |