PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0621
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 113aa    MW: 12498.5 Da    PI: 5.5101
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0621genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.31.5e-1233781052
      G2-like 10 LHerFve.aveqLGGse..kAtPktilelmkvkgLtlehvkSHLQk 52
                 LHe+ ++ av ++ G++  +AtPk+i+elm+v+gLt+++vkSH  +
  Gh_D01G0621 33 LHECGLSyAVVSIMGPQssVATPKQIRELMQVDGLTNDEVKSHSFM 78
                 66665533555555654237***********************655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-84377IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-95176IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MATSDECCSV QLIDGDGSFN DTGIESFIKE VKLHECGLSY AVVSIMGPQS SVATPKQIRE  60
LMQVDGLTND EVKSHSFMSR CLVSVHYFGL KLLVVGICQW KQPCFCSCIP FFH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.127920.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721109.12e-79PREDICTED: uncharacterized protein LOC107933412
TrEMBLA0A1U8M6F15e-78A0A1U8M6F1_GOSHI; uncharacterized protein LOC107933412
STRINGGorai.001G197300.15e-77(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1799626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.26e-11G2-like family protein