PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0554

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 475aa MW: 52286.8 Da PI: 7.4254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0554	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	6.9e-06	363	401	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gh_D01G0554 363 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 401 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.595	352	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.27E-7	362	406	No hit	No description
SuperFamily	SSF47459	1.15E-10	362	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0023	363	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-9	366	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FAWATEMVDI KAARSPMDSV SSVSGSSVVF 60 HDNPKLQVGL GPDHHHHHHH HHHPPSDLQM MGLGLPSQAM DWNQALLRGD KSEVSFRSML 120 QDHNLNASNA NYQHQQQETG GIGSSQLHWR DKMFTGDAGL KQIGRGFSLD QSQFSPHGSS 180 SDSTVTCQSL PSSLQMDSST ALYGSPSTIL QRLLGSENQP QQQQQQQSSY ENRSMNYQYG 240 AAAATSYGMN TNDQLLPNAL SKVPQFLRSS PPKQQLHGQL HFSNNAPFWN PSAAAAASMT 300 DHVRPGFFPS LQTQFQTGTF DEKPKNISEV RETSTVVKKS GNEPASTKRP RNETPSTMPA 360 FKVRKEKMGD RITALQQLVS PFGKTDTASV LSEAIEYIKF LHAQVSQVLS TPYMKNEATI 420 QHHQQNPEKS KDPAEGPKQD LRSRGLCLVP VSSTFPLTNE SPVDFWTPTF GGTFR

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FAWATEMVDI KAARSPMDSV SSVSGSSVVF  60
HDNPKLQVGL GPDHHHHHHH HHHPPSDLQM MGLGLPSQAM DWNQALLRGD KSEVSFRSML  120
QDHNLNASNA NYQHQQQETG GIGSSQLHWR DKMFTGDAGL KQIGRGFSLD QSQFSPHGSS  180
SDSTVTCQSL PSSLQMDSST ALYGSPSTIL QRLLGSENQP QQQQQQQSSY ENRSMNYQYG  240
AAAATSYGMN TNDQLLPNAL SKVPQFLRSS PPKQQLHGQL HFSNNAPFWN PSAAAAASMT  300
DHVRPGFFPS LQTQFQTGTF DEKPKNISEV RETSTVVKKS GNEPASTKRP RNETPSTMPA  360
FKVRKEKMGD RITALQQLVS PFGKTDTASV LSEAIEYIKF LHAQVSQVLS TPYMKNEATI  420
QHHQQNPEKS KDPAEGPKQD LRSRGLCLVP VSSTFPLTNE SPVDFWTPTF GGTFR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583456	1e-83	JX583456.1 Gossypium hirsutum clone NBRI_GE16500 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016742403.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	5e-87	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A1U8NWE7	0.0	A0A1U8NWE7_GOSHI; transcription factor bHLH123-like isoform X1
STRING	Gorai.002G079200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-78	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]