PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0249
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 314aa    MW: 35119.8 Da    PI: 6.162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0249genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.1e-52111351128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhP+deelv++yL kkv++ ++   + + evd++k+ePwd+p+++  + kewyf+skrd+kyatg r+nrat sgyWkatgkd++++s kg 
  Gh_D01G0249  11 LPPGFRFHPKDEELVCDYLMKKVASADT--LQLMIEVDLNKCEPWDIPETAGVGGKEWYFYSKRDRKYATGLRTNRATCSGYWKATGKDRAIHS-KGM 105
                  79**********************9983..35799*************9888899***************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg++ktLvfy+grapkg+k+dWvmhe+rl
  Gh_D01G0249 106 VVGMRKTLVFYNGRAPKGTKSDWVMHEFRL 135
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-602159IPR003441NAC domain
PROSITE profilePS5100556.52411159IPR003441NAC domain
PfamPF023651.1E-2612135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSNISLVEAK LPPGFRFHPK DEELVCDYLM KKVASADTLQ LMIEVDLNKC EPWDIPETAG  60
VGGKEWYFYS KRDRKYATGL RTNRATCSGY WKATGKDRAI HSKGMVVGMR KTLVFYNGRA  120
PKGTKSDWVM HEFRLDGPLS PPNLATLKED WVLCRVFHKT RDTITKPSSM GTTCLDDTSS  180
SSQLPPLTDP YLISDHTGPN SNEQVPCFSV LSQTDPNSFK VEMQPNMPTE TLTSSSSVDH  240
QQQQQQMMPA INDITSCLDS FPGDKMVIKA VLNNLTQLDT YLNVKESTSF DGGISSDHSY  300
LSGIWDCPTF GINY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-56615915168NAC domain-containing protein 19
3swm_B2e-56615915168NAC domain-containing protein 19
3swm_C2e-56615915168NAC domain-containing protein 19
3swm_D2e-56615915168NAC domain-containing protein 19
3swp_A2e-56615915168NAC domain-containing protein 19
3swp_B2e-56615915168NAC domain-containing protein 19
3swp_C2e-56615915168NAC domain-containing protein 19
3swp_D2e-56615915168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3936101e-131GQ393610.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0575 SSR marker CGR5622 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453553.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-103NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D2NHN90.0A0A0D2NHN9_GOSRA; Uncharacterized protein
STRINGGorai.002G033100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-106NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]