PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0181
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 341aa    MW: 38471.1 Da    PI: 7.5121
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0181genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-10112135326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    +C++++r+G C++Gd C FaHg
  Gh_D01G0181 112 STICSDHRRGGGCPRGDDCEFAHG 135
                  569********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6108139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404109137IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5109136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-7110137IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4142173IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.052145169IPR000571Zinc finger, CCCH-type
SMARTSM003562.6145168IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTTVYDPSHH LTSKKLCFKD LEIPPRKKQL HCCHKAAAME LPHHEARLHK YLPSNEDDDG  60
TDDPYGTDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPIRYQY SSTICSDHRR  120
GGGCPRGDDC EFAHGVFECW LHPTRYRTEA CKDGKNCKRK VCFFAHSSRE LRLLPESPPP  180
LKYKNLDNNY NHCCLFCRSV TSSSSLSPTS TLLGLSHFSR SPSLSPPLSP LGHQQRTPRY  240
GGDRLSKFGT EMTSSYDDVL LKEVMSCLGT MNLSEASSPM ATTANTNIPW LDVSFKGAPS  300
MESPSGSGEY FNGGGDDEKN NGNGVVLDHD LDLGWVNELL M
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO604605110.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8878950.0AY887895.1 Gossypium hirsutum putative CCCH-type zinc finger transcription factor (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452063.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA14e-74C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2P5PXS70.0A0A2P5PXS7_GOSBA; Uncharacterized protein
STRINGGorai.002G020100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-49C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]