PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0167
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 422aa    MW: 47025.9 Da    PI: 4.8432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0167genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19212262256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Gh_D01G0167 212 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 262
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.80E-34211271No hitNo description
SuperFamilySSF541719.81E-23212270IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-32212270IPR001471AP2/ERF domain
PROSITE profilePS5103222.932212269IPR001471AP2/ERF domain
SMARTSM003802.7E-40212275IPR001471AP2/ERF domain
PfamPF008472.2E-12213262IPR001471AP2/ERF domain
PRINTSPR003678.4E-11213224IPR001471AP2/ERF domain
PRINTSPR003678.4E-11235251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAAAENSGEF NKGVGDVQDW EVDKGNELDF GFEKRQWKPV FGEASMSQRP NKKITQRQEP  60
VRSIASMADQ SSSLPSSSPS LTLSLPSSSS SSNASLPSSR MVFPFAFDGT QNPVYFPHPM  120
FQPLPQSQQQ MISFSPQQQQ QQQHGFVYRP FFAGESSPVP PPQLPQPSQQ QLLQYWSDTL  180
SPRRRMMMMS RLGQDGRQLY RPPLQPINTT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG  240
TFDTAEDAAL AYDREAFKLR GENARLNFPE LFLNKDKDTS PGPSSTVPPQ DEPKEPNSQS  300
TEMEAMPPPS QGDNNPDSDS GLGSSEATAS DEVQMAAEGS GSGSGSQELV WGDMSEAWFN  360
VIQEGWGPGS PVWDDLDTSN NLLLPSNLPF PNQNHHQFGD TSSPSSSSSC PMKSFFWKDH  420
DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21211269160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146530.0JX614653.1 Gossypium hirsutum clone NBRI_GE58209 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715556.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1U8LLR30.0A0A1U8LLR3_GOSHI; ethylene-responsive transcription factor ERF054-like
STRINGGorai.002G018000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-48ERF family protein