PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0053 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 133aa MW: 15778.6 Da PI: 9.5223 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.1 | 4.1e-10 | 21 | 94 | 12 | 83 |
HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS B3 12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 ++ rl++p + + + ++ ++l+++d+ +W++++i ++g v++kGW eFv a+gLk+ D +v + Gh_D01G0053 21 ER-RLSVPTRILYLFpytA-TDHRCFDLQVKDTGDVVWSFRCIR--RDGVyakPVFSKGWLEFVYAKGLKAYDKIVVY 94 33.4777877774447743.345679****************54..33333459*******************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-12 | 8 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-11 | 9 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.47E-11 | 10 | 94 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MKHILHMELI FSKLLTQTDI ERRLSVPTRI LYLFPYTATD HRCFDLQVKD TGDVVWSFRC 60 IRRDGVYAKP VFSKGWLEFV YAKGLKAYDK IVVYKAKGVV EGDVPYRIEV KRKILRLMGE 120 DIWIEIEHLH LYS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468593.1 | 1e-88 | PREDICTED: uncharacterized protein LOC105786621 | ||||
TrEMBL | A0A0D2QYA7 | 4e-92 | A0A0D2QYA7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G006400.1 | 7e-93 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22060 | 3 | 4 |