PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G2222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 387aa MW: 43122.4 Da PI: 6.1863 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +++ +v ++G+g+W++++++ g++R++k+c++rw +yl Gh_A13G2222 14 KGLWTEEEDAKILAYVSKHGTGNWTAVPKKAGLRRCGKSCRLRWTNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 5.7e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T++E+el++++++ lG++ W+ Ia+ ++ gRt++++k++w++ Gh_A13G2222 67 RESFTPQEEELIIRLHAALGSR-WSIIAQQLP-GRTDNDVKNYWNT 110 679*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.472 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.7E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.311 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MVRPPCCDKL NVKKGLWTEE EDAKILAYVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY 60 LRPDLKRESF TPQEEELIIR LHAALGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG 120 IDPVTHKPFS QVLADYGNIG GLLKSRTRIG SLNRDMKNSF MIKPEPHPPQ PAIATEGFSN 180 INNSRVMTTM ASPGIEPIQE NFFPSSNINQ HAATCGSLDL LSQLQAIKLV TEASNYAGYQ 240 IISPQFPNQY TLSLSSPSSS SSTSSTCSTT AQEKAGLAFS WRDFLLEDAF LPYDHHPQGQ 300 DHIPEFESKD IAPQNHSGNE TSAEHIDDDK NIIINNNSRV LSGMDSELLS YGIQASSSTE 360 SSFVAAMLDQ ENEMFSEFAN LLEDPCY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617863.1 | 0.0 | PREDICTED: transcription factor MYB35 | ||||
TrEMBL | A0A1U8KXF0 | 0.0 | A0A1U8KXF0_GOSHI; transcription factor MYB35-like isoform X2 | ||||
STRING | Gorai.010G139300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 4e-76 | MYB family protein |