PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G2128
Common NamebHLH3
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 332aa    MW: 36288.1 Da    PI: 7.0489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G2128genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14149195354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Gh_A13G2128 149 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 195
                  79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-12149195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-13152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-5159198No hitNo description
Gene3DG3DSA:3.30.70.2602.4E-4231278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MCAKKEEYRD YPRPIHNLQA SQQHHQLHND ELFGATTGGL VFPQLPWSFR PVQALSPIQY  60
FTGNPVQDHV HDSFLVPPPP SSYGGLFTST APPAAALQFA YDGAPSVNRL RILSDSFGAV  120
GSAPLGLEAE LGKMTAQEIM DAKAMAASKS HSEAERRRRE RINNHLAKLR SLLPSTTKTD  180
KASLLAEVIQ HVKELKRQTC LIAETSPVPT ETDELTVDTS DQDGKFVIKA SLCCEDRSDL  240
LPDLIKALKD LRLKTLKAEI TTLGGRVKNV LFITGEEQES SCSSDGGDVI GSIQEALKAV  300
MEKSTCGNES NSSGNVKRQR TNISTVLQHR SL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.222850.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7514270.0KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313754.10.0transcription factor bHLH30-like
SwissprotQ9S7Y15e-97BH030_ARATH; Transcription factor bHLH30
TrEMBLR9X0T00.0R9X0T0_GOSHI; BHLH transcription factor
STRINGGorai.013G079600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]