PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G2013
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 959aa    MW: 106090 Da    PI: 9.5105
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G2013genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17205238134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C +t+Tp+WR+gp g+ktLCnaCG++yr+ +
  Gh_A13G2013 205 CGHCEVTETPQWRKGPMGSKTLCNACGVRYRSGR 238
                  9******************************987 PP
2B370.42.4e-22416517199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t++  d +g+ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF   + +++ 
  Gh_A13G2013 416 FAKTLTQSDANNGGGFSVPRYCAETIfpaldysADPPVQ--TVVAVDVHGQLWKFRHIYRGTPRRHLLTTGWSAFVNRKKLVAGDSVVFL--RAENGG 509
                  89****************************996555555..8************************************************..347777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                   +v+++r+
  Gh_A13G2013 510 IRVGIRRA 517
                  8***9996 PP
3Auxin_resp105.85e-35557634783
   Auxin_resp   7 tksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   +++FevvY+Pr+s++eF+v+++ v++a+kv+ + GmRfkmafetedss++++  Gt+++v+ +dpvrWp+S+Wr+L+
  Gh_A13G2013 557 GRKPFEVVYYPRTSRPEFCVRASAVNTAMKVPRCCGMRFKMAFETEDSSRISWfVGTISSVQVADPVRWPDSPWRLLE 634
                  4689***********************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-15199249IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.754203235IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.3E-14203236IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-14204262No hitNo description
CDDcd002021.01E-13204251No hitNo description
PROSITE patternPS003440205230IPR000679Zinc finger, GATA-type
PfamPF003201.6E-15205238IPR000679Zinc finger, GATA-type
Gene3DG3DSA:2.40.330.104.8E-36408518IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-28414517IPR015300DNA-binding pseudobarrel domain
CDDcd100173.66E-19415516No hitNo description
PROSITE profilePS5086312.534416518IPR003340B3 DNA binding domain
PfamPF023622.7E-20416517IPR003340B3 DNA binding domain
SMARTSM010191.2E-20416518IPR003340B3 DNA binding domain
PfamPF065078.1E-30557633IPR010525Auxin response factor
PROSITE profilePS5174516.87847927IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MLKGLMVGVS GNVIKDFGFP LYDNNGGYGG GSFSGGEECD CNFQHLAGFC GGDFLDYSIV  60
ESLTFSCDGY SQQSSSTKAS YSESMDVKGS SWFQTSSPVS VLDSHISSSG ANRIPINPNL  120
SFQGKRCRTN RRRASTLNSP FTLPFVSSTF STSQRFYFPV GSKSESVSHL SQKPTKKRLK  180
KKNLKLLSGF SESNNSSQQL VIRKCGHCEV TETPQWRKGP MGSKTLCNAC GVRYRSGRLF  240
PEYRPAGSPT FIASLHSNSH KKVVEMRRKS QFTGDSNNIR VVNPTETSLR PVNSTARLVQ  300
VFCKKMELEK SLDPNLWHAC AGSMVQIPPI NSKVYYFPQG HAEHSLNSVD FPFSRQFPPL  360
VLCRVDSVKF MADVETDEVY AKIMLTPLQN NKPDVGDDDG VSNGGCNNIE KKAASFAKTL  420
TQSDANNGGG FSVPRYCAET IFPALDYSAD PPVQTVVAVD VHGQLWKFRH IYRGTPRRHL  480
LTTGWSAFVN RKKLVAGDSV VFLRAENGGI RVGIRRAKLG IGDGDCYGSL GFYGDSKRNG  540
KVKPEEVLEA AKAASGGRKP FEVVYYPRTS RPEFCVRASA VNTAMKVPRC CGMRFKMAFE  600
TEDSSRISWF VGTISSVQVA DPVRWPDSPW RLLEVTWDEP DLLQNVNRVN PWSVELASNV  660
PAIHLSPFLR PMKKLRLPQH LDGLLVQSFP SKPLSPSNPF YRLSDNAHVG IQGARQVQFG  720
LPISDLHLKN NLNSGLCLSG FQRFDLHDRT PDTFTNSCNN LSCNKSKIPK KCRFLLFGQP  780
ILTEQQLSQS SSSEAVSEVV SGNSCKTKDS SNGSGSVIGN QFSPEKSSTA RFLWDRDNRA  840
IEPCMDTGHC KVFMESEDVG RTLDLSVLDS YEDLYRRLAN MFGIERSKMS GHVLYRDATG  900
AVKRTGDEPF SAFMKITKRL TIRMDSSNNT IERSRLTGTR TAENGFHGSN KTGPLSMFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-7831265551388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5857635e-78JX585763.1 Gossypium hirsutum clone NBRI_GE19427 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645690.10.0PREDICTED: auxin response factor 10-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P5Y5Q50.0A0A2P5Y5Q5_GOSBA; Auxin response factor
STRINGGorai.013G267100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]