PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G1994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 29029.7 Da PI: 7.5018 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Gh_A13G1994 11 KGPWTEKEDMVLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 58 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.5e-18 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l +++++++G++ W++Iar+++ gRt++++k++w++++ Gh_A13G1994 64 RGKMTPQEEKLVLELHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 109 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.16 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-30 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-15 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-21 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-10 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 25.568 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-17 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 64 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 66 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.58E-12 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEMVKDESCR KGPWTEKEDM VLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP 60 GLKRGKMTPQ EEKLVLELHA KWGNRWSRIA RRLPGRTDNE IKNYWRTHMR KMALEKKRST 120 SPSSSSSSTV TRVDSLPSSG TGKVSFYDTG GPKMAVFDDV KGYSMDEIWK DIDMSEGNTT 180 KLPSSENYSE QGCCNHFSCP SMASSPPWDF SWDYSLWKMD DDDEEEEEEE RKVFIATTNN 240 QLFNLFVHKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-27 | 11 | 111 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-26 | 11 | 111 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-26 | 11 | 111 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-27 | 11 | 111 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 6e-27 | 11 | 111 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616521 | 0.0 | JX616521.1 Gossypium hirsutum clone NBRI_GE61253 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464122.1 | 1e-168 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q9LX82 | 2e-90 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2P5Y5S1 | 0.0 | A0A2P5Y5S1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G265300.1 | 1e-168 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 9e-88 | myb domain protein 48 |
Publications ? help Back to Top | |||
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