PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1901
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 486aa    MW: 54737.6 Da    PI: 8.7291
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1901genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.6e-172176257
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 +kRt  t+ ql +Lee+++ ++ ps e++++LA +++Lte+q++ WF+ rR k+k+
  Gh_A13G1901 21 KKRTFKTPAQLLALEEAYKAQKFPSDEMKARLAVQIRLTEKQISSWFCHRRLKDKR 76
                 89****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-18477IPR009057Homeodomain-like
PROSITE profilePS5007115.9371777IPR001356Homeobox domain
SMARTSM003896.8E-171981IPR001356Homeobox domain
SuperFamilySSF466895.99E-162077IPR009057Homeodomain-like
CDDcd000862.22E-152177No hitNo description
PfamPF000465.9E-152176IPR001356Homeobox domain
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEDSGEQQTE ENKGSVDVAN KKRTFKTPAQ LLALEEAYKA QKFPSDEMKA RLAVQIRLTE  60
KQISSWFCHR RLKDKRRDES YPNGRQDHSS GVIQDRGSGL RQDSCGSIKQ GDYRNIDLRE  120
VESRRIYGQE FPAADLKFEC RSHQNPYDDR MEDTSSESNL SLNDQPENGA ITQINPRSSK  180
SIGYKPSGYL KVKGEIENPA ITAVKRQLGR HYKEDGPLLG IQFDSLPPGA FEFPSSSPVN  240
EPMYVGDTRQ THSPDTSGVI KQPSNIVNVH NSKISSQDSD MEGAKFNTVQ GSERLDRKSH  300
HQLKHKSSLD IYNDSTKKST LTDSKRIKTS SKFAVEKMGS DSFPNHPSPY GMKISDEQQK  360
PWLHDDDSHT YKALKNENLS RTSNLIRGYN ESSSTERGSS ARMGKVEKLR GEWKTKKECP  420
VTVKTDLKNK LRVSKQVNVQ YPQQDFAAYA PHARLPLLTN QTKGSSMDVP SSFSEDETAE  480
TDSSSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16977RRLKDKRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728291.10.0PREDICTED: uncharacterized protein LOC107939467
RefseqXP_016728292.10.0PREDICTED: uncharacterized protein LOC107939467
TrEMBLA0A1U8MN960.0A0A1U8MN96_GOSHI; uncharacterized protein LOC107939467
STRINGGorai.013G254100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122022531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.11e-73HB-other family protein