PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A13G1901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 486aa MW: 54737.6 Da PI: 8.7291 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.1 | 2.6e-17 | 21 | 76 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ ql +Lee+++ ++ ps e++++LA +++Lte+q++ WF+ rR k+k+ Gh_A13G1901 21 KKRTFKTPAQLLALEEAYKAQKFPSDEMKARLAVQIRLTEKQISSWFCHRRLKDKR 76 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 4 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.937 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-17 | 19 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-16 | 20 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.22E-15 | 21 | 77 | No hit | No description |
Pfam | PF00046 | 5.9E-15 | 21 | 76 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 486 aa Download sequence Send to blast |
MEDSGEQQTE ENKGSVDVAN KKRTFKTPAQ LLALEEAYKA QKFPSDEMKA RLAVQIRLTE 60 KQISSWFCHR RLKDKRRDES YPNGRQDHSS GVIQDRGSGL RQDSCGSIKQ GDYRNIDLRE 120 VESRRIYGQE FPAADLKFEC RSHQNPYDDR MEDTSSESNL SLNDQPENGA ITQINPRSSK 180 SIGYKPSGYL KVKGEIENPA ITAVKRQLGR HYKEDGPLLG IQFDSLPPGA FEFPSSSPVN 240 EPMYVGDTRQ THSPDTSGVI KQPSNIVNVH NSKISSQDSD MEGAKFNTVQ GSERLDRKSH 300 HQLKHKSSLD IYNDSTKKST LTDSKRIKTS SKFAVEKMGS DSFPNHPSPY GMKISDEQQK 360 PWLHDDDSHT YKALKNENLS RTSNLIRGYN ESSSTERGSS ARMGKVEKLR GEWKTKKECP 420 VTVKTDLKNK LRVSKQVNVQ YPQQDFAAYA PHARLPLLTN QTKGSSMDVP SSFSEDETAE 480 TDSSSD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 69 | 77 | RRLKDKRRD |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016728291.1 | 0.0 | PREDICTED: uncharacterized protein LOC107939467 | ||||
Refseq | XP_016728292.1 | 0.0 | PREDICTED: uncharacterized protein LOC107939467 | ||||
TrEMBL | A0A1U8MN96 | 0.0 | A0A1U8MN96_GOSHI; uncharacterized protein LOC107939467 | ||||
STRING | Gorai.013G254100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12202 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 1e-73 | HB-other family protein |