PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1873
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 297aa    MW: 33196.2 Da    PI: 5.041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1873genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+++    G g+W+ +ar  g+ R++k+c++rw +yl
      Gh_A13G1873 20 KGLWSPEEDDKLINYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 67
                     678*******************************************97 PP
2Myb_DNA-binding51.52.3e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
      Gh_A13G1873  73 RGAISPEEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 116
                      7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.51567IPR017930Myb domain
SuperFamilySSF466898.2E-2818114IPR009057Homeodomain-like
SMARTSM007172.3E-111969IPR001005SANT/Myb domain
PfamPF002497.2E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-232174IPR009057Homeodomain-like
CDDcd001673.58E-92367No hitNo description
PROSITE profilePS5129425.52568122IPR017930Myb domain
SMARTSM007171.4E-1572120IPR001005SANT/Myb domain
PfamPF002492.1E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2575123IPR009057Homeodomain-like
CDDcd001675.01E-1177115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMRKPNNGST ITTTNNKLRK GLWSPEEDDK LINYMLTNGQ GCWSDVARNA GLQRCGKSCR  60
LRWINYLRPD LKRGAISPEE EELIVHLHSI LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK  120
RLKNSSPNTP DSSSSKFSKD SNPVGFITME QQGVLLPTYL DLSSTSSNSS LQSTVTNPGT  180
AFGATIGYFA TNVNGLYGEN EMLCGEELYM PPLETVRENL KIENTFESNI TTIPTTNNNN  240
INNNNIVDCS MKSENVMTGA AIGNFWLGEE IKVGEWDLED LMKDVSSFPF LDFQSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271512222128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in stems and siliques, specifically in xylem. {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in the regulation of secondary wall biosynthesis in fibers and vessels (PubMed:17890373). Transcription activator of the mannan synthase CSLA9 that recognizes and binds to the DNA consensus sequence 5'-[AG][GT]T[AT]GGT[GA]-3' cis-regulatory element of CSLA9 promoter (PubMed:24243147). Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1. Functions redundantly with MYB83 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). Is an obligate component of the transcriptional regulatory complex toward the commitment of secondary wall cellulose synthesis. Is required for functional expression of the three secondary wall CESA genes, CESA4, CESA7 and CESA8 (PubMed:23726771). {ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:23726771, ECO:0000269|PubMed:24243147}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA). Positively regulated by SND1 and homolog proteins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17890373}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153551e-147JX615355.1 Gossypium hirsutum clone NBRI_GE59296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605372.10.0PREDICTED: transcription factor MYB46-like
SwissprotQ9LXV28e-72MYB46_ARATH; Transcription factor MYB46
TrEMBLA0A2P5W1630.0A0A2P5W163_GOSBA; Uncharacterized protein
STRINGGorai.013G251100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-70myb domain protein 46
Publications ? help Back to Top
  1. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  4. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]