PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1818
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 249aa    MW: 28349.2 Da    PI: 5.0078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1818genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-1355104754
                  HHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 
                    Er+RR+++N++++ Lr ++P+ ++ +++++ ++Ka+i + A++YI++L
  Gh_A13G1818  55 VSERNRRKKLNERLFALRAVVPNiSMlSNRHGFMDKASIIKDAIDYIQEL 104
                  57*********************7779999999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-1539119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.49448104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.12E-1152108No hitNo description
SMARTSM003539.4E-1254110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1554119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-1155104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENIENIGDE YKNYWETKYF LENEEYSWPI DEFSGYYDSS SPDGAASSVA AKNIVSERNR  60
RKKLNERLFA LRAVVPNISM LSNRHGFMDK ASIIKDAIDY IQELHDQEGR IQAEIRELES  120
GKLKKNPGFE YDQELSGLRS KKTKLDNIFD YGGSRASPIE VLELKVTHMG EKTMVVSITC  180
SKKTDTMVRL CEVFESLKLK IITANITAVS GRLLKTVFVE ADEREKDELK VQIETAIAAL  240
NDPQSPMSM
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628370.11e-175PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV92e-89BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0B0N0J51e-173A0A0B0N0J5_GOSAR; Transcription factor bHLH35-like protein
STRINGGorai.013G242800.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-92bHLH family protein