PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G1701

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 323aa MW: 36152.4 Da PI: 8.2904

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G1701	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103	2.8e-32	186	242	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVN+KQy++Il+RRq Rakle+++kl ksrkpylheSRh+hAl+R RgsgGrF Gh_A13G1701 186 DEPIYVNPKQYHGILRRRQYRAKLEAQNKL-VKSRKPYLHESRHRHALNRVRGSGGRF 242 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.7E-36	184	245	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.017	185	245	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.0E-27	187	242	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.4E-23	188	210	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.4E-23	219	242	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAVRVQNFPK KTFDESSVRS LSHLSVSCTP WWSLNEQQIE EPLPHNISLK VETPSQLYHQ 60 AKHLDLQLPD QELTTVQAID RTHCEVGAIG VTSSQRDPSE SAGPFESCEK DTEGQVKPVF 120 LVNNPNTLFS PSHQNYNHSM ACTQYPYANA YFNGLFTPYG PQAIIQAQLG GNAPTRIPLP 180 LDLAEDEPIY VNPKQYHGIL RRRQYRAKLE AQNKLVKSRK PYLHESRHRH ALNRVRGSGG 240 RFLSKKTLQQ PNVICNNQTN SISELESHYS RMAGYDGPNT SCMNISSVSN NDCNFQRLEH 300 GFANISRAGG TGDGIRHGAS VVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	186	253	2	69	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.7122	1e-92	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673792.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_016673793.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_016673794.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_016673795.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBL	A0A1U8IDB3	0.0	A0A1U8IDB3_GOSHI; nuclear transcription factor Y subunit A-7-like isoform X1
STRING	Gorai.013G226200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18096	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	3e-41	nuclear factor Y, subunit A3