PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G1655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 404aa MW: 45525.9 Da PI: 4.5111 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.2 | 1.7e-35 | 50 | 141 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+++++ed+++++++swse nsf+v+d+++f++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++ weF+++ F g+k+ll++ik Gh_A13G1655 50 FLTKTFDMVEDPSTDSVVSWSEARNSFIVWDSHKFSTTLLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKQLLKTIK 137 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ Gh_A13G1655 138 RRRN 141 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.4E-60 | 46 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.9E-34 | 46 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.0E-38 | 46 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.4E-31 | 50 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-20 | 50 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-20 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 89 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.1E-20 | 101 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MEGVVVKEEE TQMTFATAVG TTAGLSSSSS SSNVTPQPKE GLNEVGPPPF LTKTFDMVED 60 PSTDSVVSWS EARNSFIVWD SHKFSTTLLP RYFKHNNFSS FIRQLNTYGF RKVDPDRWEF 120 ANEGFLGGQK QLLKTIKRRR NIVQSSQHQA GGGGACVELG QFGLDEELER LKRDRSVLLA 180 EIVRLRQHQQ HSKDQIVAME DRLQSTEKKQ QQIMSFLAKA LRNPTFIRQL AQNRQAQGVE 240 IGRKRRLTAS PSVENLQQEA VPVVVDNDQV EEQEGLATIE TEIETFFNSA MDDESSTEIK 300 DHIPSPMPLS SVTNNLGVNE TLWEELVHED LLAGEPKEEI VVGDQAEVDV EVEDLAANPI 360 DWGDDLQELV DQMGYLSEQR FMKVPFEAMH LPQASSFTFL VFLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-26 | 41 | 139 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-26 | 41 | 139 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-26 | 41 | 139 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 138 | LKTIKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9358 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067420 | 0.0 | KR067420.1 Gossypium hirsutum HSF39 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016673858.1 | 0.0 | PREDICTED: heat shock factor protein HSF30 isoform X1 | ||||
Swissprot | P41152 | 1e-133 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A0D2VH47 | 0.0 | A0A0D2VH47_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G220400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11672 | 27 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-123 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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