 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A13G1590 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
| Family | ARR-B | ||||||||
| Protein Properties | Length: 611aa MW: 66474.2 Da PI: 7.2188 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 88.6 | 6e-28 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQk+Rl
Gh_A13G1590 199 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILELMNVEKLTRENVASHLQKFRL 252
79*******************.********************************8 PP
| |||||||
| 2 | Response_reg | 79.5 | 1.1e-26 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95
vl vdD+p+ + ll ++l++ +y +v+++++++ al++l+e++ +Dl++ D+ mp+mdG++ll++ e +lp+i+++a+g+ +++ + + Ga
Gh_A13G1590 20 VLAVDDDPTCLLLLGTLLRRCQY-HVTTTSQAKTALKMLRENKnkFDLVISDVHMPDMDGFKLLEHVGLEM-DLPVIMLSANGDTKLVMKGITHGAC 114
799********************.***************888888**********************6644.8************************ PP
EEEESS--HHHHHH CS
Response_reg 96 dflsKpfdpeelvk 109
d+l Kp+ +eel +
Gh_A13G1590 115 DYLLKPVRIEELQN 128
***********986 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.5E-168 | 1 | 607 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 1.34E-35 | 17 | 138 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 1.7E-42 | 17 | 171 | No hit | No description |
| SMART | SM00448 | 7.3E-33 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.372 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 4.0E-24 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 5.10E-24 | 21 | 133 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 9.7E-30 | 196 | 257 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 11.466 | 196 | 255 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.4E-19 | 197 | 256 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 4.9E-25 | 199 | 252 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.5E-6 | 201 | 250 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 611 aa Download sequence Send to blast |
MTVEQIGSEG KDQFPIGMRV LAVDDDPTCL LLLGTLLRRC QYHVTTTSQA KTALKMLREN 60 KNKFDLVISD VHMPDMDGFK LLEHVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYLLKP 120 VRIEELQNIW QHVVRRKKKD RCNSGSKEKP HPDSGEAAGI GNVDNNGKLN KKRKDQNEDE 180 DYERDENGHD NEDPSAQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKKIL ELMNVEKLTR 240 ENVASHLQKF RLYLKRISCV ANQQANMAAA LGTADSAYLR MGSLNGLGNF HTLAGSDQLH 300 NAAFRSFPPS GVLGRLNTPA GLGIRGLPSP GTIQLGHVQN SGNPTNDLSK LQSFVPGNHN 360 TNILQGMPMS LELDRLQHNK SVGHIGELPT TDSTTVFPGS GNLVDARITG FSNNPLLGVT 420 SNSLMLEGSS QQATSHTSVS AIGFQNGNAL SDFTSIAPAS NQLQDSKAGS QGQASPINCN 480 AGQIIRSAPQ EWNAPRKDAP YQSHASINSS IPINSAMIQL GQCLDRNNSI FHKTTDLDSV 540 GPLNFVDPLS IKHGEGDNSI MEPSVIEKEG YLMFQPRPHG SHVPDNIGSL EDLASAMMKQ 600 VRLVVSSLVN I |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-26 | 195 | 258 | 1 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 134 | 139 | RRKKKD |
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Detected immediately after seed germination. {ECO:0000269|PubMed:17363254}. | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in leaves. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016673950.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like isoform X2 | ||||
| Swissprot | P62598 | 1e-148 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
| TrEMBL | A0A1U8I6U3 | 0.0 | A0A1U8I6U3_GOSHI; Two-component response regulator | ||||
| STRING | Gorai.010G243900.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM1981 | 28 | 79 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G25180.1 | 1e-138 | response regulator 12 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|