PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G1487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 958aa MW: 107748 Da PI: 5.0729 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.6e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Gh_A13G1487 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Gh_A13G1487 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.31E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.1E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 8.27E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.13E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 2.2E-60 | 406 | 654 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 958 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACARD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFYDVADED RPVEQPKFPT 240 TIEELEGKRR VDIEAQLRKQ DIAKNKISQR QDTPSAILQA NKLNDPETVR KRSKLMLPSP 300 QISDHELEEI AKMGYASDLL AENEELAGGS GATRALLANY SQTPRPGMTP LRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KTQIQTPNPM LTPAATPGTA 420 GLTPRTGMTP SSDGYSFALT PKGTPIRDGL HINEEMDLHD SAKLEQRRQA DLRRNLRSGL 480 GTLPQPKNEY QIVIQPPPED NEEPEEKIEE DMSDRIARER AEEEARQQAL LKKRSKVLQR 540 ELPRPPSASL ELIRDSLMRT DGDKSSFVPP TSIEQADEMI RKELLSLLEH DNAKYPLDEK 600 ANKAKKKGAK RPANGSIPSI EDFEEEEMKE ADSLIKEEAE ILRVAMGHEN ESLDDFVEAH 660 NTCLNDLMYF PTRNAYGLSS VAGNMEKLAA LQTEFENVKK KMDNDKSKAE SMEKKYNVLT 720 QGYERRAATL WRHIESTVKQ IDTAGTELEC FQALQKQEHL AASHRINGLW EEVQKQKELE 780 QTLQRRYGNL MSELERMQRL MNVYRAQAEK QEEAGEKNHA LELSEAAASQ VAVPSAGHSE 840 PAPSLEHLDS SLDGQPSAEV DVNADSGKEH ATMDIGTDGN MHINEPLVVE DKGDDITQTL 900 NKMSGDAATS SEVATESINP DSFSTKQESI QETVESTEVD NSCVLGGDTS ENQTGMEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22121 | 0.0 | boll| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016673611.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A1U8I5X7 | 0.0 | A0A1U8I5X7_GOSHI; cell division cycle 5-like protein | ||||
STRING | Gorai.013G187200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6453 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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