PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1001
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 269aa    MW: 29280.6 Da    PI: 6.5483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1001genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09195234649
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 
                  +++Er RR ri +++ +L+el+P+     +k  + a++Le+Ave
  Gh_A13G1001 195 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVE 234
                  689*********************7....688**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.538189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-10192235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.69E-8193234No hitNo description
Gene3DG3DSA:4.10.280.102.9E-10194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-5195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6195234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKPTPGGSSS SSGGGAEGSR AGLARFRSAP ATWLEALLEE EEEDPLKPSQ CLTQLLTGNS  60
SSTPTIRNSL LFPNSADPSG LFEPSGFQRQ NSSPADFLGN NPAAASDAYF SNFGVAANYD  120
YLSPTMDVSP SSKRASELDT QFPPTKFHSQ LKGEPSDQIS GGISNLIDVD MEKLLEDSVP  180
CRVRAKRGCA THPRSIAERV RRTRISDRIR KLQELVPNMD KQTNTADMLE EAVENSQSIK  240
RDANAKLKID RLPRAFSVNR LAYSDKVGW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.119560.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675769.11e-162PREDICTED: transcription factor bHLH81-like isoform X2
SwissprotQ9C8P86e-85BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2P5RGP51e-169A0A2P5RGP5_GOSBA; Uncharacterized protein
STRINGGorai.013G138300.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-75bHLH family protein