PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G0917 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 146aa MW: 15665 Da PI: 10.3129 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.1 | 6.7e-20 | 9 | 43 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++ Gh_A13G0917 9 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 43 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.8E-16 | 3 | 54 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.585 | 3 | 39 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.33E-13 | 4 | 43 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-16 | 7 | 43 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.38E-14 | 8 | 56 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 9 | 34 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.7E-18 | 9 | 43 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MSESSKKFCT DCKTTKTPLW RGGPAGPKSL CNACGIRYRK KRRAMLCLNK GIEKKKEISH 60 SPSSDSSSSI APANDGGGEN LSANLNGLSE SVKMSLFALG SEVLFQTSSS LSGVVKKQRC 120 QRRRRLGEEE QAAISLMALS CGTVFA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.12364 | 0.0 | root |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX612525 | 7e-33 | JX612525.1 Gossypium hirsutum clone NBRI_GE55096 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618886.1 | 1e-90 | PREDICTED: GATA transcription factor 16-like | ||||
TrEMBL | A0A2P5QYC9 | 1e-75 | A0A2P5QYC9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G127900.1 | 6e-76 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16911 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-17 | GATA transcription factor 15 |