PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0889

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1161aa MW: 129283 Da PI: 9.3356

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0889	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	45	85	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++ E e++++a +++G++ Wk++a+ + +R+ +++ ++ Gh_A13G0889 45 PWSKAEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMVEAFYI 85 8***************99.*****.**99988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-10	40	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.597	41	94	IPR017884	SANT domain
SMART	SM00717	1.6E-7	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-6	44	84	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-8	45	86	IPR001005	SANT/Myb domain
CDD	cd00167	8.16E-7	45	84	No hit	No description
Pfam	PF06584	9.9E-33	653	753	IPR033471	DIRP domain
SMART	SM01135	3.2E-57	653	754	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1161 aa Download sequence Send to blast
MAPTRKYKTV NKQYSSKCEV SPDKDAGNSR KSNPKKKLFD KLGSPWSKAE IERFYKAYRE 60 YGKDWKKVAA AVRNRSTEMV EAFYIMNRAY LSLPDGVASV IGLIAMMTDH YSVLGGSDAE 120 IESNEPSEIP RKTQKRKWVK AHFGSSKEDV FLPQSIASTQ GCLSLLKRIG FNGINPHAVG 180 RRTPRVPVSY SYRRDDMENY NPPKKRVKKS EANDNDDEHV AAVTLTGALQ RGSCPQFSQR 240 PYKKAECRRS TPVQSYDRML LQSETTKAKL PSSSSKHWME SRHGVKEPVI GTYIKDTGPT 300 EDMEGAGTVE VRGKGKKVYR KKVKAGEFIN NLSDDVGEAC SGIEEGIIDR AVKGKVEMEI 360 SGAKCKLSPW SQRKKSKKIV SGDESASLDA LLALANLSTS ISPASIIESE VSAKFKEDRI 420 ARETDEKPSA SEAASTSHRR DETKHIGPKE KVLNLITGAE DGTSRKSKVG RYSAKDDNVV 480 SEPKQRAEST NNSKKSKSKS LSTSQLQISN PEAQIDSPFI QSFDNEDMAE EVNKSLTKGS 540 SAQSSVQSRQ RKSFRVPEDS LTKNDPKFAE TDSLVSTLQV PAESKLVSLP NKHQSRRKMN 600 LKRALLSTDI NSLNYTLANQ PNKDSLSQDG LKERLSFCLS SNLARRWCSF EWFYSAIDYA 660 WFVKKEFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKQYRESVR 720 QHYAQLRIGT TEGLPMDLPQ PLSIGQRVSA IHPETREVND GKVLGLEHDC FKVQFDCPEL 780 GVELVTDIDC MPLYPLENLP ETLRSQNLAF DKFPVTPNES QVNGHSDFRG SGVYAPSGHL 840 ENATGSVNML ANRIKEDASH NILNAKTSVP SVFAAHQTAN GLPLTVAHIQ GREADIQVMS 900 ELNRALDKKE AILMELRNTN DDILDNKSGG SCLKGSEPFK RHIPTVLVQL KEANGQVSSA 960 LHNLRQHNAY PANPVSPQQK PPTKSNFLGS LTSSIDSSLV SLESDSVAGE IVEGSRLKAG 1020 SMVDAAIKAM SSTKEDEDAF MRIVEVLDSI DKPQFTPDIR MPVIKSAEPE NGSISYQKHL 1080 VSRLPQNNEQ VPSELITSCV ASLLMIQTCT ERRFPPADVA QIMDLATRSL HPWCSENLRI 1140 YREIQRCMGK IKTQILALIP T

Sequence ? help Back to Top

Protein Sequence Length: 1161 aa Download sequence Send to blast

MAPTRKYKTV NKQYSSKCEV SPDKDAGNSR KSNPKKKLFD KLGSPWSKAE IERFYKAYRE  60
YGKDWKKVAA AVRNRSTEMV EAFYIMNRAY LSLPDGVASV IGLIAMMTDH YSVLGGSDAE  120
IESNEPSEIP RKTQKRKWVK AHFGSSKEDV FLPQSIASTQ GCLSLLKRIG FNGINPHAVG  180
RRTPRVPVSY SYRRDDMENY NPPKKRVKKS EANDNDDEHV AAVTLTGALQ RGSCPQFSQR  240
PYKKAECRRS TPVQSYDRML LQSETTKAKL PSSSSKHWME SRHGVKEPVI GTYIKDTGPT  300
EDMEGAGTVE VRGKGKKVYR KKVKAGEFIN NLSDDVGEAC SGIEEGIIDR AVKGKVEMEI  360
SGAKCKLSPW SQRKKSKKIV SGDESASLDA LLALANLSTS ISPASIIESE VSAKFKEDRI  420
ARETDEKPSA SEAASTSHRR DETKHIGPKE KVLNLITGAE DGTSRKSKVG RYSAKDDNVV  480
SEPKQRAEST NNSKKSKSKS LSTSQLQISN PEAQIDSPFI QSFDNEDMAE EVNKSLTKGS  540
SAQSSVQSRQ RKSFRVPEDS LTKNDPKFAE TDSLVSTLQV PAESKLVSLP NKHQSRRKMN  600
LKRALLSTDI NSLNYTLANQ PNKDSLSQDG LKERLSFCLS SNLARRWCSF EWFYSAIDYA  660
WFVKKEFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKQYRESVR  720
QHYAQLRIGT TEGLPMDLPQ PLSIGQRVSA IHPETREVND GKVLGLEHDC FKVQFDCPEL  780
GVELVTDIDC MPLYPLENLP ETLRSQNLAF DKFPVTPNES QVNGHSDFRG SGVYAPSGHL  840
ENATGSVNML ANRIKEDASH NILNAKTSVP SVFAAHQTAN GLPLTVAHIQ GREADIQVMS  900
ELNRALDKKE AILMELRNTN DDILDNKSGG SCLKGSEPFK RHIPTVLVQL KEANGQVSSA  960
LHNLRQHNAY PANPVSPQQK PPTKSNFLGS LTSSIDSSLV SLESDSVAGE IVEGSRLKAG  1020
SMVDAAIKAM SSTKEDEDAF MRIVEVLDSI DKPQFTPDIR MPVIKSAEPE NGSISYQKHL  1080
VSRLPQNNEQ VPSELITSCV ASLLMIQTCT ERRFPPADVA QIMDLATRSL HPWCSENLRI  1140
YREIQRCMGK IKTQILALIP T

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX576973	1e-139	JX576973.1 Gossypium hirsutum clone NBRI_GE8704 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016674176.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
TrEMBL	A0A1U8I7I8	0.0	A0A1U8I7I8_GOSHI; protein ALWAYS EARLY 2-like isoform X1
STRING	Gorai.013G124600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-149	DNA binding