PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G0832 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 154aa MW: 17518.8 Da PI: 5.6519 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 8.8e-17 | 5 | 50 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++++G g W++I+ g++R++k+c++rw++yl Gh_A13G0832 5 AWTEEEDYLLKKCIERYGEGKWHRIPVLAGLKRCRKSCRLRWLNYL 50 7*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.192 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-13 | 2 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-20 | 5 | 52 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.06E-11 | 5 | 50 | No hit | No description |
Pfam | PF00249 | 4.1E-15 | 5 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.23E-19 | 6 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-6 | 53 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MGGVAWTEEE DYLLKKCIER YGEGKWHRIP VLAGLKRCRK SCRLRWLNYL RPNIKRGSFA 60 AEEVNLIINL HSLLAATTTA SMKPRSPAHV SPNTQQETSV WAPFHDVQVN QQGQEVAAEE 120 PGTLLGDLEF DEGGSSKWDW DDFIFNMDLW TASL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016674394.1 | 1e-100 | PREDICTED: transcription factor MYB114-like | ||||
TrEMBL | A0A1U8IEZ4 | 2e-98 | A0A1U8IEZ4_GOSHI; transcription factor MYB114-like | ||||
STRING | Gorai.013G118300.1 | 2e-93 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17352 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-32 | myb domain protein 113 |