PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0655
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 380aa    MW: 42517.4 Da    PI: 8.0061
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0655genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.65.1e-53141411128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  + pGfrFhPtdeelv +yLk+kv++++ ++ e+ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++
  Gh_A13G0655  14 MLPGFRFHPTDEELVGFYLKRKVQQRPPSM-EFIKQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGN 110
                  579************************999.99***************9888999***************************************9566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + +glkk+Lvfykgra kg+ktdW+mhe+rl
  Gh_A13G0655 111 KCIGLKKSLVFYKGRATKGVKTDWMMHEFRL 141
                  67***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5812172IPR003441NAC domain
PROSITE profilePS5100556.95614172IPR003441NAC domain
PfamPF023657.0E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MKERSESDKM EEIMLPGFRF HPTDEELVGF YLKRKVQQRP PSMEFIKQLD IYKYDPWDLP  60
KMATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGN KCIGLKKSLV  120
FYKGRATKGV KTDWMMHEFR LPSFADSATP KIFLEKTLPP NDAWAICRIF KKTNSTAQRA  180
LSQSRVSQVP EASSSSISEV PSMLLTGKTS LNLNVDLLQT SNGAFSSLEF VPYKPPQHSM  240
SNGDLTSLVF TPLDHTSTDS RAVDVTSMLL NMLSSMLGDH YCGKATDVLH FGGDCTGTLP  300
HEMQGNNIMS GGDHESSLFK SMNVGSHGDD QWGGLRSIGF PISMPLPMNV MGDAWKPSLA  360
WDSSCPSEMS TSFCSTKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-5451797171NO APICAL MERISTEM PROTEIN
1ut4_B3e-5451797171NO APICAL MERISTEM PROTEIN
1ut7_A3e-5451797171NO APICAL MERISTEM PROTEIN
1ut7_B3e-5451797171NO APICAL MERISTEM PROTEIN
3swm_A4e-54517910174NAC domain-containing protein 19
3swm_B4e-54517910174NAC domain-containing protein 19
3swm_C4e-54517910174NAC domain-containing protein 19
3swm_D4e-54517910174NAC domain-containing protein 19
3swp_A4e-54517910174NAC domain-containing protein 19
3swp_B4e-54517910174NAC domain-containing protein 19
3swp_C4e-54517910174NAC domain-containing protein 19
3swp_D4e-54517910174NAC domain-containing protein 19
4dul_A3e-5451797171NAC domain-containing protein 19
4dul_B3e-5451797171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472360.0KC847236.1 Gossypium hirsutum NAC domain protein NAC59 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675568.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
RefseqXP_016747616.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A1U8P8T70.0A0A1U8P8T7_GOSHI; transcription factor JUNGBRUNNEN 1-like
STRINGGorai.013G085000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein