PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0648

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 366aa MW: 39723.4 Da PI: 9.9322

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0648	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.2	3.5e-39	47	172	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Gh_A13G0648 47 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGLKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAShlrntyfnpn 144 789******************************************************************99986666666666444444555554322 PP TCP 89 ............kaaksaakskksqksaasalnlakesrakarar 121 + ++n+ ++s+++++++ Gh_A13G0648 145 fttqqlrtrselD-----------------QRNVLDDSSQQQQQQ 172 2222222222220.................233333333222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-39	51	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.087	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV 60 EGRGRRIRMP ATCAARVFQL TRELGLKSDG ETIEWLLQQA EPAVIAATGT GTIPANFTSL 120 NISLRSSGSS MSASHLRNTY FNPNFTTQQL RTRSELDQRN VLDDSSQQQQ QQQRRVLFPG 180 VALSSEDSLT FPGTSSTTLN AFLQAKQEIR DAKAADTSIG KRRRPEQQET PQNQVGSYLI 240 QSNTGSIPTS HNPIPATFWI GNQVISGSGT GDPMWTLPST NNTNMYRGTM SSGVHFMNLA 300 APMALLPAQQ FGLGIGAGGG SVTDTHSSMP ASLNAYRPVP GIVISEPPGG GSHQHHGGEN 360 RHDSTC

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV  60
EGRGRRIRMP ATCAARVFQL TRELGLKSDG ETIEWLLQQA EPAVIAATGT GTIPANFTSL  120
NISLRSSGSS MSASHLRNTY FNPNFTTQQL RTRSELDQRN VLDDSSQQQQ QQQRRVLFPG  180
VALSSEDSLT FPGTSSTTLN AFLQAKQEIR DAKAADTSIG KRRRPEQQET PQNQVGSYLI  240
QSNTGSIPTS HNPIPATFWI GNQVISGSGT GDPMWTLPST NNTNMYRGTM SSGVHFMNLA  300
APMALLPAQQ FGLGIGAGGG SVTDTHSSMP ASLNAYRPVP GIVISEPPGG GSHQHHGGEN  360
RHDSTC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2412	0.0	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527504	1e-125	HQ527504.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AVN7Y simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016674599.1	0.0	PREDICTED: transcription factor TCP15-like
TrEMBL	A0A1U8IFH5	0.0	A0A1U8IFH5_GOSHI; transcription factor TCP15-like
STRING	Gorai.N023400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3915	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	7e-39	TCP family protein