PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0647

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 350aa MW: 38036.5 Da PI: 10.0946

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0647	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.2	1.5e-38	47	167	2	116
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++k+++++++hTkv+gR+RR+R++a+ca r+F+L++eLG+++d++tieWLlqqa+pa+ ++tgt++++a+++ + s +ss+s+ s++ Gh_A13G0647 47 PPKRTSTKDRHTKVEGRGRRIRMPATCADRVFQLTRELGHKSDGETIEWLLQQAEPAVFAATGTGTIPANFTsLNISLRSSGSSMSAShlrntyfnpn 144 789******************************************************************99986666666666444444555554222 PP TCP 89 .........kaaksaakskksqksaasalnlakesra 116 + + ++n+ ++s++ Gh_A13G0647 145 fttqqlrtrS------------EW--DQRNVLDDSSQ 167 2222222220............22..22333333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.0E-39	51	167	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.018	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV 60 EGRGRRIRMP ATCADRVFQL TRELGHKSDG ETIEWLLQQA EPAVFAATGT GTIPANFTSL 120 NISLRSSGSS MSASHLRNTY FNPNFTTQQL RTRSEWDQRN VLDDSSQQQQ RRVLFPGVAL 180 ASEDSLTFPG TSSTTLNAFL QAKQEIRDAK AADTSIGKRR RPEQQETPQN QVGSYLIQSN 240 TGSIPTSHNP IPATFWIGNQ VISGSGTGDP MWTFPSTNNT NMYRGTMSSG VHFMNLAAPM 300 ALLPAQQFGS GIGAGGGSVT DTHLSMLASL NAYRSVPGIG VSEPPAGGSH

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV  60
EGRGRRIRMP ATCADRVFQL TRELGHKSDG ETIEWLLQQA EPAVFAATGT GTIPANFTSL  120
NISLRSSGSS MSASHLRNTY FNPNFTTQQL RTRSEWDQRN VLDDSSQQQQ RRVLFPGVAL  180
ASEDSLTFPG TSSTTLNAFL QAKQEIRDAK AADTSIGKRR RPEQQETPQN QVGSYLIQSN  240
TGSIPTSHNP IPATFWIGNQ VISGSGTGDP MWTFPSTNNT NMYRGTMSSG VHFMNLAAPM  300
ALLPAQQFGS GIGAGGGSVT DTHLSMLASL NAYRSVPGIG VSEPPAGGSH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2412	0.0	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ395137	1e-117	GQ395137.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2160 SSR marker DPL0730 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016674598.1	0.0	PREDICTED: transcription factor TCP15-like
TrEMBL	A0A1U8IE49	0.0	A0A1U8IE49_GOSHI; transcription factor TCP15-like
STRING	Gorai.N023400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3915	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	7e-39	TCP family protein