PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0630
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 558aa    MW: 61121.4 Da    PI: 5.4702
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0630genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.5e-30261320159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+++d +++++tYeg+Hnh+
  Gh_A13G0630 261 MNDGCQWRKYGQKIAKGNPCPRAYYRCTLSpTCPVRKQVQRCSDDMSILITTYEGNHNHP 320
                  58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-32246322IPR003657WRKY domain
SuperFamilySSF1182902.35E-27253322IPR003657WRKY domain
PROSITE profilePS5081128.828256322IPR003657WRKY domain
SMARTSM007742.2E-36261321IPR003657WRKY domain
PfamPF031067.7E-27262320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MENKRILGDE EEKTIKPSSS SEENHDFIAI NNKEENQSLV KQEDDNSKVW ISKKDNSTII  60
KEQEKEIESA KAKMGEVKEE NERLKLLLCQ IVKDYQSLHT RFLDVLKKEA NKSTTTPIVG  120
SHEENNEEHH QLISLSLGRS SSNDPPKKQE KTSSKEDDDD DDDDDDDDDG KHGDDGGGLE  180
LGLECKFEPD GSIEPEKNNN PSCESSLGKP EEEEEKEPTE VWPPSKILKS MKNGDEEDVS  240
EPMQLKKTRV SVRTRCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTLS PTCPVRKQVQ  300
RCSDDMSILI TTYEGNHNHP LPLSATAMAS TTSAAASMLH SQSSTSQPAL PTSLSAPTAS  360
LSISTTHLHA LCFNFSQNPT PSHHYHFPNS SISTLNSHPT VTLDLTAPPP PHNNNPSYFS  420
RLSNLPTYSS SSSSCLNWKK TSSHLTFGGP LNNYPAIRQS PPYMQITNHQ ALSETLTAAA  480
TKAITSNPSF CSALAAALTS FVGNNGSGGG TASELGFASS CYLQGKKPSS MVNPHQQQKQ  540
GSLLLFPPSN TASDPPAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21248322174WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9080950.0DQ908095.1 Gossypium hirsutum clone LIB5327-041-A1-N1-E10_PS_Gh153 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674770.10.0PREDICTED: probable WRKY transcription factor 61 isoform X1
TrEMBLA0A1U8I9530.0A0A1U8I953_GOSHI; probable WRKY transcription factor 61 isoform X1
STRINGGorai.013G082300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2244145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-61WRKY DNA-binding protein 72