PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A13G0595

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 1073aa MW: 120650 Da PI: 6.1437

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A13G0595	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	185.2	6.8e-58	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 l+ ++rwl++ ei++iL n++k+++t+e++trp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v++l+cyYah+een++fqrr+y Gh_A13G0595 20 LEAQHRWLRPAEICEILCNYQKFHITSEPPTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDMLHCYYAHGEENENFQRRSY 117 5679******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 w+Le +l +iv+vhylevk Gh_A13G0595 118 WMLEPDLMHIVFVHYLEVK 136 **************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	86.497	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.4E-84	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-51	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.6E-6	491	580	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	2.2E-6	494	573	IPR002909	IPT domain
SuperFamily	SSF81296	1.29E-16	494	580	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	16.016	676	793	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.47E-11	676	791	No hit	No description
SuperFamily	SSF48403	1.07E-13	677	793	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.0E-14	679	796	IPR020683	Ankyrin repeat-containing domain
SMART	SM00015	0.5	892	914	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.17E-7	892	943	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.858	893	922	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0016	894	913	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0092	915	937	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.413	916	940	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.7E-4	918	937	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1073 aa Download sequence Send to blast
MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILCNYQ KFHITSEPPT RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEENE NFQRRSYWML 120 EPDLMHIVFV HYLEVKGSRT IGGIRENSDL SNSQTSSLLT SSNSVTHTKE PSAHANSACS 180 ITSLTSLYED ADSEDSRQAS SRVRTSPQIG NATVMDKLDP GFLNHYSPHP IQGQSSIPGV 240 TEVSHLHGDR PGDTNYGSCI SEAQRTLGLT SWEQGLEPYV PVYADAFSNT SLTSTQPDTI 300 SISLQQETMM KGKLLAVESA GGEFGNPLPT QPHWQNPLAD NALELPKWSM DSSSNFDLPF 360 DSKLFEQSAH DFQNTLEEFA GHGVFNDQPL HKNLQMQSIN ADSHSVWRTY PDNDMHLDGN 420 VNYALSLKKS LLDGEESLKK VDSFSRWVTK ELGEVDNLQM QSSSGIAWST VECGSVSDDA 480 SLSPSLSHDQ LFSIVDFSPK WAYIDLKTEV LIIGTYLRRQ EQVAKYNWSC MFGEVEVSAE 540 VIADGILSCY APPHSVGQVP FYVTCSNRLA CSEVREFDYR AGFTKDINIL DIYDIASREM 600 LMRFERLLSL KSSNYPNHHS EGVREKRELI TKIISMREEE ECHWIVDPSS DKDVSQQKEK 660 DCLLQKLMKE KLYSWLLHKI MEDGKGPNVL DEKGQGVLHL AAALGYDWAI KPTVTAGVSI 720 NFRDANGWTA LHWAAFCGRQ GPLNLEQTVA ILVSLGAAAG ALTDPTPEFP LGRPPADLAS 780 DNGHKGISGF LAESSLTSFL SNLTMNDQKE AVQTVSDRIA TPVYDSDEIL SLKDSLTAVC 840 NATQAADRIH QMFRMQSFQR KQLSESGHGV SDEHAISLLT AKARRPLHID GVAHAAATQI 900 QKKYRGWKKR KEFLLIRQRI VKIQAHVRGH QVRKQYRTII WSVGILEKVI LRWRRKGSGL 960 RGFRRDAITK EPDPQCTPSK EDDYDFLKEG RKQTEERLQK ALTRVKSMAQ NPEGRGQYRR 1020 LLTLVQGIRE NKACDMVLSS TEEAGEGEGD GDEDFIDIDS LLDDETFMSI AFE

Sequence ? help Back to Top

Protein Sequence Length: 1073 aa Download sequence Send to blast

MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILCNYQ KFHITSEPPT RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEENE NFQRRSYWML  120
EPDLMHIVFV HYLEVKGSRT IGGIRENSDL SNSQTSSLLT SSNSVTHTKE PSAHANSACS  180
ITSLTSLYED ADSEDSRQAS SRVRTSPQIG NATVMDKLDP GFLNHYSPHP IQGQSSIPGV  240
TEVSHLHGDR PGDTNYGSCI SEAQRTLGLT SWEQGLEPYV PVYADAFSNT SLTSTQPDTI  300
SISLQQETMM KGKLLAVESA GGEFGNPLPT QPHWQNPLAD NALELPKWSM DSSSNFDLPF  360
DSKLFEQSAH DFQNTLEEFA GHGVFNDQPL HKNLQMQSIN ADSHSVWRTY PDNDMHLDGN  420
VNYALSLKKS LLDGEESLKK VDSFSRWVTK ELGEVDNLQM QSSSGIAWST VECGSVSDDA  480
SLSPSLSHDQ LFSIVDFSPK WAYIDLKTEV LIIGTYLRRQ EQVAKYNWSC MFGEVEVSAE  540
VIADGILSCY APPHSVGQVP FYVTCSNRLA CSEVREFDYR AGFTKDINIL DIYDIASREM  600
LMRFERLLSL KSSNYPNHHS EGVREKRELI TKIISMREEE ECHWIVDPSS DKDVSQQKEK  660
DCLLQKLMKE KLYSWLLHKI MEDGKGPNVL DEKGQGVLHL AAALGYDWAI KPTVTAGVSI  720
NFRDANGWTA LHWAAFCGRQ GPLNLEQTVA ILVSLGAAAG ALTDPTPEFP LGRPPADLAS  780
DNGHKGISGF LAESSLTSFL SNLTMNDQKE AVQTVSDRIA TPVYDSDEIL SLKDSLTAVC  840
NATQAADRIH QMFRMQSFQR KQLSESGHGV SDEHAISLLT AKARRPLHID GVAHAAATQI  900
QKKYRGWKKR KEFLLIRQRI VKIQAHVRGH QVRKQYRTII WSVGILEKVI LRWRRKGSGL  960
RGFRRDAITK EPDPQCTPSK EDDYDFLKEG RKQTEERLQK ALTRVKSMAQ NPEGRGQYRR  1020
LLTLVQGIRE NKACDMVLSS TEEAGEGEGD GDEDFIDIDS LLDDETFMSI AFE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016674629.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A1U8IFK6	0.0	A0A1U8IFK6_GOSHI; calmodulin-binding transcription activator 2-like
STRING	Gorai.013G061100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4082	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]