PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G0576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 286aa MW: 31215.6 Da PI: 9.4854 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41 | 3.2e-13 | 110 | 136 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk e+Cr++ ++G+C+yG++C+FaHg+ Gh_A13G0576 110 YKSEICRTWEEFGHCRYGSKCQFAHGK 136 99***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.9E-7 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-10 | 109 | 140 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.314 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-16 | 109 | 141 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-10 | 110 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDSFYKESNK LNVLNSNIPK LMLPARSRTN YYSSPENLIK YLRSNSLSSS GNNSSSGKSS 60 FRSSVSPQSE KTPVKVVEED VLVMDGVLVA SDTNIAGSGS SSSPGSVGFY KSEICRTWEE 120 FGHCRYGSKC QFAHGKEEVR PSCFSFRSKP EAQMYKSYAS AYGSISRPLN PIRETAATIA 180 QNESSTRPDY TNQRSSSTMK PGNTPLTTNI AMKPKTERDN ASTIGPYTSA TNGSYWSPQD 240 DGINVTLPSS SPGKTLSRAD IDAYIDSVLY GPTTRRRLPV FSAFSP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016675577.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
TrEMBL | A0A1U8IBU7 | 0.0 | A0A1U8IBU7_GOSHI; tristetraprolin-like | ||||
STRING | Gorai.013G063400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15770 | 8 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 3e-08 | C3H family protein |