PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0551
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 274aa    MW: 30958.1 Da    PI: 5.4544
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0551genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.81.6e-1771292128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                  p Gf F Pt ee++++yLk+ ++g++++   v+k  +iy ++ ++ +  ++ ++    f++ ++ k+++++r +r++ +g W ++   kev+sk +ge
  Gh_A13G0551   7 PLGFLFLPTKEEILCDYLKPIIKGDPIPS-GVLKARHIYGANRETWN-IFD-QDLLESFWVLTKLKKKSKSRIERTAGDGCWFQQFA-KEVKSKdGGE 100
                  89**************************9.89999999988665554.233.3343356677777777899***********98877.5666654999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  ++g  k +++ +++++k ++ +W+mhe++l
  Gh_A13G0551 101 VIGFDKYFTYTSKKKKK-SNGQWIMHEFSL 129
                  9*********9655555.89********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-193148IPR003441NAC domain
PROSITE profilePS5100521.7216148IPR003441NAC domain
PfamPF023651.0E-117129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPQLQIPLGF LFLPTKEEIL CDYLKPIIKG DPIPSGVLKA RHIYGANRET WNIFDQDLLE  60
SFWVLTKLKK KSKSRIERTA GDGCWFQQFA KEVKSKDGGE VIGFDKYFTY TSKKKKKSNG  120
QWIMHEFSLK DQEAVGLSDL VIFEIKNKDA AVVSSDYEES EGEIKKNKKR KLMAVPSDST  180
NDFATMPVGN QTFDYMAPEI GGFSPFSACL DQQPNPWTSA GVDGNLGVPD YNSHHLVPAK  240
PLLYFRFEEA NEAGDANLFF TFQEVDNILN SNQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164171KKNKKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675384.11e-180PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8IHN01e-179A0A1U8IHN0_GOSHI; NAC domain-containing protein 83-like
STRINGGorai.013G066200.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16345312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-08NAC domain containing protein 28