PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0468
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 342aa    MW: 37424.6 Da    PI: 4.5398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0468genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17123168352
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                    GVr++k +g+W+AeIr+p e   ++r++lg+f+t e+Aa+a++a +++
  Gh_A13G0468 123 PVGVRRRK-WGKWAAEIRHPLE---KTRIWLGTFDTLEDAAEAYDAKKLE 168
                  68***998.**********965...5********************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.703122179IPR001471AP2/ERF domain
PfamPF008478.5E-11122169IPR001471AP2/ERF domain
SMARTSM003809.5E-15122184IPR001471AP2/ERF domain
PRINTSPR003671.9E-7123134IPR001471AP2/ERF domain
CDDcd000182.17E-21124169No hitNo description
SuperFamilySSF541717.85E-16124169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-21125169IPR001471AP2/ERF domain
PRINTSPR003671.9E-7145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MPEPRKEASN KNKLYKKSKK TQPILSEDTQ MTRKVRVIFH DPYATDSSSS EDESERTITR  60
KAPRGKLVVR EVGVPILGLV SHSKPLEFEA SSQDSNCKTP TRRKRVLDTT LDDNALVVEA  120
KRPVGVRRRK WGKWAAEIRH PLEKTRIWLG TFDTLEDAAE AYDAKKLEFG ALAVAAAAAA  180
ATASSDKTYD ISCSASTSHT SNSVASVSEE SVSPSSHTTP SSVLELDTSA SVAFFNSNHD  240
SGDANTEGFD ANFANLVIPD LCFIDDPLLC GSVGQELNLD EEQSDYLFVN DSGVILEDYC  300
SIEDVSICGI EGDEPSELPD CDFSTDDFDF CKKVAHLNIL CP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121129RPVGVRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.127760.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276451e-135HQ527645.1 Gossypium herbaceum clone NBRI_B_EYI1BW404I0CI4 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674842.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_016674843.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_016674844.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLA0A1U8I9Q10.0A0A1U8I9Q1_GOSHI; ethylene-responsive transcription factor ERF119-like
STRINGGorai.013G076100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-30ERF family protein