PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0307
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 361aa    MW: 40534.4 Da    PI: 5.5188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0307genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11190243154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +++ hn+ Er RR ++  a+  L  llP++s +++k+ s a i  +AveYI +L
  Gh_A13G0307 190 KKEEHNAKERIRRMKLHAAYLALGALLPSDSTGSKKRKSTALIIDRAVEYIPEL 243
                  6889*************************85555555**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-12185254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.532189243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-9190244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-10190248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-7195249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSSLHLENLF SIPEATDEYL WPLTQDNKDD GKNFSASIQT DGHQCSSSSS QAVMDNLNGN  60
KLDPVLDLDQ GIPALLSADY TIEDNARTGD QLGTTSKFIL ESVDPNIVGE SMESVLDYPI  120
DVSLSAALED SDDIDLVPHE TSSRQHPSTN QETRDAHINA KRISSKTRGR NHRFKEGINM  180
EDNGEGTTMK KEEHNAKERI RRMKLHAAYL ALGALLPSDS TGSKKRKSTA LIIDRAVEYI  240
PELEKEIQKL TLRKNDMLSI IKNKKSCAVL NHFQLRQPSV SVHEIKQGEF IVQICTQEYP  300
DCSFLNLLHN IEEEGICIIS ASTHQVSDHG HCYHLHIQMH ERLDGENHIA SLREKVISWL  360
C
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145441e-137JX614544.1 Gossypium hirsutum clone NBRI_GE58013 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674978.10.0PREDICTED: transcription factor bHLH101-like isoform X1
RefseqXP_016674979.10.0PREDICTED: transcription factor bHLH101-like isoform X1
TrEMBLA0A1U8IGI60.0A0A1U8IGI6_GOSHI; transcription factor bHLH101-like isoform X1
STRINGGorai.013G038100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.11e-22bHLH family protein