PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A13G0291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 428aa MW: 47149.2 Da PI: 6.2679 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.7e-10 | 237 | 284 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gh_A13G0291 237 SHSLAERARREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 284 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.98E-17 | 231 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.78E-10 | 231 | 288 | No hit | No description |
PROSITE profile | PS50888 | 15.58 | 233 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-17 | 233 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 237 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 239 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 428 aa Download sequence Send to blast |
MNTALPEMLQ CSDLTVLERQ RARLKWQEEQ FQQQQQQQSY FSELSCGAFS SQTNHVQGFQ 60 GGFMGGASGD SVLSDMVMAR QVKPDPGLES PWPELGKVDM AAMGFGPCGY GNGPSFDMNH 120 AISRTSSCPP AVAATKAVEV KANSEKMASA VGKESFKKRK VEKLQNSKVV AEDESKRIKA 180 CEDEGEESKI TGPNTNKSSN NKKEASGDAS KENSKVSEVQ KPDFIHVRAR RGQATDSHSL 240 AERARREKIS ERMKYLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL SMKLATVNPR 300 LDFSIDNLYA KEVFSSCTTN FPTLDMAPEM ANPPYLQFNP IQQVVPCCGV EMGINSPDMT 360 LRRTISAPVS IPDASFLDSS CLTMHQCSAM QQIQHTAIWD VELQNLYNVA FDQGRSTPPF 420 PSQPFAGA |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.23145 | 1e-59 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and stems. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU532258 | 0.0 | EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence. | |||
GenBank | EU532309 | 0.0 | EU532309.1 Gossypium barbadense clone I11-11 ISSR marker genomic sequence. | |||
GenBank | EU532316 | 0.0 | EU532316.1 Gossypium barbadense clone I11-19 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016734177.1 | 0.0 | PREDICTED: transcription factor HBI1-like isoform X1 | ||||
Swissprot | Q8GY61 | 1e-60 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A1U8N4Y7 | 0.0 | A0A1U8N4Y7_GOSHI; transcription factor HBI1-like isoform X1 | ||||
TrEMBL | A0A2P5VT45 | 0.0 | A0A2P5VT45_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G036400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5947 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34530.1 | 7e-63 | cryptochrome-interacting basic-helix-loop-helix 1 |