PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G0285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SRS | ||||||||
Protein Properties | Length: 203aa MW: 23133.1 Da PI: 9.1155 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 87.8 | 2.5e-27 | 11 | 64 | 2 | 55 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqq 55 r+g+++C+dCGn+akk+C ++RCRtCC+s+g++C+th+kstWvpa++r + q Gh_A13G0285 11 RQGSTRCEDCGNKAKKECGFMRCRTCCRSKGYQCQTHIKSTWVPAYRRHRTRPQ 64 57899****************************************988543333 PP | |||||||
2 | DUF702 | 70.1 | 7.1e-22 | 73 | 134 | 93 | 154 |
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++ le+ ++P+ev s+a f++vrvss++d+++e+a++t+v+i G vfkG+LydqG+++ Gh_A13G0285 73 RQNPSSGLEVGNFPAEVISPATFQRVRVSSMEDEDDEYAFRTSVNIEGRVFKGLLYDQGPHH 134 445677899999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.2E-23 | 14 | 66 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.9E-26 | 17 | 58 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 4.3E-19 | 77 | 133 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.0E-19 | 85 | 132 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNELRRMMML RQGSTRCEDC GNKAKKECGF MRCRTCCRSK GYQCQTHIKS TWVPAYRRHR 60 TRPQISHNPT RLRQNPSSGL EVGNFPAEVI SPATFQRVRV SSMEDEDDEY AFRTSVNIEG 120 RVFKGLLYDQ GPHHSLGESS SRDQTHLHQQ QPNQIIAADP LTMATTTTTT STTVETLLPF 180 AYASPFNAFM SPSTQFFLHQ PKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016694534.1 | 1e-153 | PREDICTED: protein SHI RELATED SEQUENCE 3-like | ||||
TrEMBL | A0A1U8K1U2 | 1e-152 | A0A1U8K1U2_GOSHI; protein SHI RELATED SEQUENCE 3-like | ||||
STRING | Gorai.013G033500.1 | 1e-128 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 4e-48 | SHI-related sequence 7 |